Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 VPS53-216ENST00000574029 585 ntTSL 4 BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 TPRG1LP1-201ENST00000598702 760 ntBASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 MIR2861-201ENST00000636310 90 ntBASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 LETM1P2-201ENST00000597330 2178 ntBASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 PTGES2-AS1-201ENST00000443493 2100 ntBASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.29■□□□□ 0.52
ZNF540Q8NDQ6 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 AC005224.4-201ENST00000583262 1652 ntBASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 KRT19P1-201ENST00000405746 1186 ntBASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ZNF540Q8NDQ6 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 AC137761.2-201ENST00000561729 223 ntBASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 AC145350.3-201ENST00000569033 163 ntBASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
ZNF540Q8NDQ6 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
ZNF540Q8NDQ6 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
ZNF540Q8NDQ6 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.51
ZNF540Q8NDQ6 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.27■□□□□ 0.51
ZNF540Q8NDQ6 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.27■□□□□ 0.51
ZNF540Q8NDQ6 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
ZNF540Q8NDQ6 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
ZNF540Q8NDQ6 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ZNF540Q8NDQ6 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms