Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 AC053503.5-201ENST00000601508 636 ntBASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.92■□□□□ 0.62
PPP4R4Q6NUP7 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 KRT18P11-201ENST00000435214 1283 ntBASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 AC010141.2-201ENST00000452426 721 ntBASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 EEF1DP3-203ENST00000566025 782 ntBASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 AC138907.5-202ENST00000569484 235 ntBASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
PPP4R4Q6NUP7 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 Z82202.1-201ENST00000623446 1880 ntBASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 TREX1-205ENST00000625293 1783 ntBASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
PPP4R4Q6NUP7 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
PPP4R4Q6NUP7 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.89■□□□□ 0.62
PPP4R4Q6NUP7 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.62
PPP4R4Q6NUP7 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PPP4R4Q6NUP7 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.89■□□□□ 0.61
PPP4R4Q6NUP7 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PPP4R4Q6NUP7 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PPP4R4Q6NUP7 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PPP4R4Q6NUP7 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PPP4R4Q6NUP7 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms