Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
COL28A1Q2UY09 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.02■□□□□ 0.64
COL28A1Q2UY09 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 AL390719.1-204ENST00000412397 1219 ntBASIC19.02■□□□□ 0.64
COL28A1Q2UY09 KRT16P5-201ENST00000455284 522 ntBASIC19.02■□□□□ 0.64
COL28A1Q2UY09 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL28A1Q2UY09 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL28A1Q2UY09 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.02■□□□□ 0.63
COL28A1Q2UY09 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL28A1Q2UY09 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
COL28A1Q2UY09 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
COL28A1Q2UY09 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.02■□□□□ 0.63
COL28A1Q2UY09 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL28A1Q2UY09 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL28A1Q2UY09 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19■□□□□ 0.63
COL28A1Q2UY09 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL28A1Q2UY09 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL28A1Q2UY09 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
COL28A1Q2UY09 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19■□□□□ 0.63
COL28A1Q2UY09 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
COL28A1Q2UY09 IPPK-202ENST00000375522 882 ntTSL 3 BASIC19■□□□□ 0.63
COL28A1Q2UY09 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19■□□□□ 0.63
COL28A1Q2UY09 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19■□□□□ 0.63
COL28A1Q2UY09 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19■□□□□ 0.63
COL28A1Q2UY09 FITM1-202ENST00000559294 800 ntBASIC19■□□□□ 0.63
COL28A1Q2UY09 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19■□□□□ 0.63
COL28A1Q2UY09 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC19■□□□□ 0.63
COL28A1Q2UY09 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19■□□□□ 0.63
COL28A1Q2UY09 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19■□□□□ 0.63
COL28A1Q2UY09 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL28A1Q2UY09 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19■□□□□ 0.63
COL28A1Q2UY09 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL28A1Q2UY09 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL28A1Q2UY09 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19■□□□□ 0.63
COL28A1Q2UY09 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL28A1Q2UY09 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL28A1Q2UY09 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL28A1Q2UY09 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL28A1Q2UY09 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
COL28A1Q2UY09 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 AL049796.1-201ENST00000565336 1766 ntBASIC18.99■□□□□ 0.63
COL28A1Q2UY09 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 AL450487.1-201ENST00000426799 995 ntBASIC18.99■□□□□ 0.63
COL28A1Q2UY09 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 DUSP5P1-201ENST00000441325 1139 ntBASIC18.99■□□□□ 0.63
COL28A1Q2UY09 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 AC005229.4-201ENST00000610085 2198 ntBASIC18.99■□□□□ 0.63
COL28A1Q2UY09 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL28A1Q2UY09 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms