Protein–RNA interactions for Protein: P63208

SKP1, S-phase kinase-associated protein 1, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1P63208 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SKP1P63208 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SKP1P63208 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SKP1P63208 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SKP1P63208 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.79■□□□□ 0.6
SKP1P63208 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SKP1P63208 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKP1P63208 ABHD17AP1-201ENST00000358206 933 ntBASIC18.79■□□□□ 0.6
SKP1P63208 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.79■□□□□ 0.6
SKP1P63208 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.79■□□□□ 0.6
SKP1P63208 AC073648.6-201ENST00000641589 218 ntBASIC18.79■□□□□ 0.6
SKP1P63208 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.79■□□□□ 0.6
SKP1P63208 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SKP1P63208 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKP1P63208 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKP1P63208 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKP1P63208 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKP1P63208 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SKP1P63208 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKP1P63208 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.79■□□□□ 0.6
SKP1P63208 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SKP1P63208 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKP1P63208 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC18.78■□□□□ 0.6
SKP1P63208 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKP1P63208 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SKP1P63208 AC116351.2-201ENST00000606540 1585 ntBASIC18.78■□□□□ 0.6
SKP1P63208 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.78■□□□□ 0.6
SKP1P63208 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SKP1P63208 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SKP1P63208 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SKP1P63208 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SKP1P63208 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.78■□□□□ 0.6
SKP1P63208 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.78■□□□□ 0.6
SKP1P63208 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.78■□□□□ 0.6
SKP1P63208 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.78■□□□□ 0.6
SKP1P63208 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SKP1P63208 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SKP1P63208 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SKP1P63208 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
SKP1P63208 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.77■□□□□ 0.6
SKP1P63208 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.77■□□□□ 0.6
SKP1P63208 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.77■□□□□ 0.6
SKP1P63208 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.77■□□□□ 0.6
SKP1P63208 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.77■□□□□ 0.6
SKP1P63208 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.77■□□□□ 0.6
SKP1P63208 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.77■□□□□ 0.6
SKP1P63208 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SKP1P63208 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
SKP1P63208 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
SKP1P63208 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.77■□□□□ 0.59
SKP1P63208 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SKP1P63208 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SKP1P63208 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.76■□□□□ 0.59
SKP1P63208 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
SKP1P63208 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.76■□□□□ 0.59
SKP1P63208 AC092667.1-201ENST00000434301 2586 ntBASIC18.76■□□□□ 0.59
SKP1P63208 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SKP1P63208 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SKP1P63208 AC239809.2-201ENST00000415381 517 ntBASIC18.76■□□□□ 0.59
SKP1P63208 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
SKP1P63208 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.76■□□□□ 0.59
SKP1P63208 THEM4-205ENST00000489410 643 ntTSL 2 BASIC18.76■□□□□ 0.59
SKP1P63208 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.76■□□□□ 0.59
SKP1P63208 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.76■□□□□ 0.59
SKP1P63208 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.76■□□□□ 0.59
SKP1P63208 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.76■□□□□ 0.59
SKP1P63208 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
SKP1P63208 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SKP1P63208 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SKP1P63208 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.76■□□□□ 0.59
SKP1P63208 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SKP1P63208 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SKP1P63208 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SKP1P63208 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
SKP1P63208 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.76■□□□□ 0.59
SKP1P63208 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC18.75■□□□□ 0.59
SKP1P63208 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SKP1P63208 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.75■□□□□ 0.59
SKP1P63208 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SKP1P63208 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SKP1P63208 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SKP1P63208 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.75■□□□□ 0.59
SKP1P63208 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
SKP1P63208 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SKP1P63208 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SKP1P63208 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms