Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM3P62310 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LSM3P62310 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
LSM3P62310 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.84■□□□□ 0.45
LSM3P62310 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.84■□□□□ 0.45
LSM3P62310 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.84■□□□□ 0.45
LSM3P62310 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM3P62310 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LSM3P62310 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM3P62310 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.84■□□□□ 0.45
LSM3P62310 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LSM3P62310 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM3P62310 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
LSM3P62310 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LSM3P62310 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
LSM3P62310 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LSM3P62310 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.83■□□□□ 0.45
LSM3P62310 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LSM3P62310 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.83■□□□□ 0.45
LSM3P62310 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LSM3P62310 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LSM3P62310 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
LSM3P62310 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM3P62310 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM3P62310 SLC47A1P1-202ENST00000449666 945 ntBASIC17.83■□□□□ 0.44
LSM3P62310 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC17.83■□□□□ 0.44
LSM3P62310 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC17.83■□□□□ 0.44
LSM3P62310 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC17.83■□□□□ 0.44
LSM3P62310 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LSM3P62310 AL033527.3-201ENST00000566366 1196 ntBASIC17.83■□□□□ 0.44
LSM3P62310 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LSM3P62310 MIR6724-1-201ENST00000616420 92 ntBASIC17.83■□□□□ 0.44
LSM3P62310 MIR6724-2-201ENST00000616483 92 ntBASIC17.83■□□□□ 0.44
LSM3P62310 MIR6724-4-201ENST00000617390 92 ntBASIC17.83■□□□□ 0.44
LSM3P62310 MIR6724-3-201ENST00000622482 92 ntBASIC17.83■□□□□ 0.44
LSM3P62310 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
LSM3P62310 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM3P62310 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.83■□□□□ 0.44
LSM3P62310 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM3P62310 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.83■□□□□ 0.44
LSM3P62310 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM3P62310 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM3P62310 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
LSM3P62310 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.82■□□□□ 0.44
LSM3P62310 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
LSM3P62310 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC17.82■□□□□ 0.44
LSM3P62310 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC17.82■□□□□ 0.44
LSM3P62310 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LSM3P62310 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
LSM3P62310 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
LSM3P62310 AC012313.1-201ENST00000593393 3059 ntBASIC17.82■□□□□ 0.44
LSM3P62310 AP000997.3-201ENST00000623333 2250 ntBASIC17.82■□□□□ 0.44
LSM3P62310 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM3P62310 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.81■□□□□ 0.44
LSM3P62310 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LSM3P62310 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.81■□□□□ 0.44
LSM3P62310 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
LSM3P62310 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM3P62310 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LSM3P62310 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM3P62310 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC17.81■□□□□ 0.44
LSM3P62310 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LSM3P62310 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM3P62310 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
LSM3P62310 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC17.81■□□□□ 0.44
LSM3P62310 BRD4-212ENST00000630599 726 ntTSL 2 BASIC17.81■□□□□ 0.44
LSM3P62310 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM3P62310 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
LSM3P62310 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
LSM3P62310 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LSM3P62310 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM3P62310 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LSM3P62310 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM3P62310 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LSM3P62310 AC009237.3-201ENST00000393279 1427 ntBASIC17.81■□□□□ 0.44
LSM3P62310 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LSM3P62310 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LSM3P62310 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM3P62310 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC17.8■□□□□ 0.44
LSM3P62310 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.8■□□□□ 0.44
LSM3P62310 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM3P62310 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LSM3P62310 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LSM3P62310 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms