Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC13.82□□□□□ -0.2
CKS1BP61024 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 PCDHAC2-203ENST00000615316 3011 ntBASIC13.82□□□□□ -0.2
CKS1BP61024 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CKS1BP61024 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC13.82□□□□□ -0.2
CKS1BP61024 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC13.82□□□□□ -0.2
CKS1BP61024 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC13.82□□□□□ -0.2
CKS1BP61024 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CKS1BP61024 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC13.82□□□□□ -0.2
CKS1BP61024 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC13.82□□□□□ -0.2
CKS1BP61024 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC13.82□□□□□ -0.2
CKS1BP61024 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC13.82□□□□□ -0.2
CKS1BP61024 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC13.82□□□□□ -0.2
CKS1BP61024 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CKS1BP61024 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CKS1BP61024 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC13.82□□□□□ -0.2
CKS1BP61024 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC13.82□□□□□ -0.2
CKS1BP61024 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CKS1BP61024 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CKS1BP61024 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CKS1BP61024 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
CKS1BP61024 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 LTF-203ENST00000426532 2494 ntTSL 2 BASIC13.81□□□□□ -0.2
CKS1BP61024 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CKS1BP61024 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC13.81□□□□□ -0.2
CKS1BP61024 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC13.81□□□□□ -0.2
CKS1BP61024 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CKS1BP61024 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CKS1BP61024 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 SNX3-202ENST00000349379 890 ntTSL 2 BASIC13.81□□□□□ -0.2
CKS1BP61024 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 BX842568.3-201ENST00000418104 571 ntBASIC13.81□□□□□ -0.2
CKS1BP61024 AL356441.2-201ENST00000443009 864 ntBASIC13.81□□□□□ -0.2
CKS1BP61024 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC13.81□□□□□ -0.2
CKS1BP61024 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CKS1BP61024 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CKS1BP61024 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
CKS1BP61024 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC13.81□□□□□ -0.2
CKS1BP61024 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
CKS1BP61024 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC13.81□□□□□ -0.2
CKS1BP61024 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CKS1BP61024 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC13.81□□□□□ -0.2
CKS1BP61024 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
CKS1BP61024 FP700111.2-201ENST00000619190 1892 ntBASIC13.8□□□□□ -0.2
CKS1BP61024 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
CKS1BP61024 AC020907.5-201ENST00000624372 1936 ntBASIC13.8□□□□□ -0.2
CKS1BP61024 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
CKS1BP61024 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC13.8□□□□□ -0.2
CKS1BP61024 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
CKS1BP61024 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC13.8□□□□□ -0.2
CKS1BP61024 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 AICDA-202ENST00000537228 667 ntTSL 5 BASIC13.8□□□□□ -0.2
CKS1BP61024 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC13.8□□□□□ -0.2
CKS1BP61024 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC13.8□□□□□ -0.2
CKS1BP61024 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CKS1BP61024 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC13.8□□□□□ -0.2
CKS1BP61024 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms