Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.69■□□□□ 0.9
HDAC4P56524 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.69■□□□□ 0.9
HDAC4P56524 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.69■□□□□ 0.9
HDAC4P56524 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
HDAC4P56524 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
HDAC4P56524 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.69■□□□□ 0.9
HDAC4P56524 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.69■□□□□ 0.9
HDAC4P56524 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC4P56524 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC4P56524 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.69■□□□□ 0.9
HDAC4P56524 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.69■□□□□ 0.9
HDAC4P56524 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HDAC4P56524 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC4P56524 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.68■□□□□ 0.9
HDAC4P56524 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC4P56524 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.68■□□□□ 0.9
HDAC4P56524 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC4P56524 PHGDH-210ENST00000641115 1638 ntBASIC20.68■□□□□ 0.9
HDAC4P56524 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.68■□□□□ 0.9
HDAC4P56524 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC4P56524 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.68■□□□□ 0.9
HDAC4P56524 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.68■□□□□ 0.9
HDAC4P56524 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.68■□□□□ 0.9
HDAC4P56524 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.68■□□□□ 0.9
HDAC4P56524 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.68■□□□□ 0.9
HDAC4P56524 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC4P56524 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
HDAC4P56524 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC4P56524 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HDAC4P56524 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HDAC4P56524 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
HDAC4P56524 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
HDAC4P56524 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
HDAC4P56524 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.67■□□□□ 0.9
HDAC4P56524 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC4P56524 AC124283.5-201ENST00000624661 1809 ntBASIC20.67■□□□□ 0.9
HDAC4P56524 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC4P56524 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
HDAC4P56524 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.67■□□□□ 0.9
HDAC4P56524 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.67■□□□□ 0.9
HDAC4P56524 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC4P56524 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC4P56524 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
HDAC4P56524 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.67■□□□□ 0.9
HDAC4P56524 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.67■□□□□ 0.9
HDAC4P56524 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.67■□□□□ 0.9
HDAC4P56524 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.67■□□□□ 0.9
HDAC4P56524 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC4P56524 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.67■□□□□ 0.9
HDAC4P56524 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
HDAC4P56524 AC009237.14-201ENST00000609975 1594 ntBASIC20.67■□□□□ 0.9
HDAC4P56524 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC4P56524 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
HDAC4P56524 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HDAC4P56524 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC4P56524 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC4P56524 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC4P56524 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.66■□□□□ 0.9
HDAC4P56524 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC4P56524 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC4P56524 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.66■□□□□ 0.9
HDAC4P56524 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.66■□□□□ 0.9
HDAC4P56524 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.66■□□□□ 0.9
HDAC4P56524 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.66■□□□□ 0.9
HDAC4P56524 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
HDAC4P56524 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.66■□□□□ 0.9
HDAC4P56524 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC4P56524 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.66■□□□□ 0.9
HDAC4P56524 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC4P56524 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HDAC4P56524 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
HDAC4P56524 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC4P56524 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC4P56524 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.65■□□□□ 0.9
HDAC4P56524 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.65■□□□□ 0.9
HDAC4P56524 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC4P56524 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC4P56524 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.65■□□□□ 0.9
HDAC4P56524 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.65■□□□□ 0.9
HDAC4P56524 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC4P56524 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC4P56524 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC4P56524 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.65■□□□□ 0.9
HDAC4P56524 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC4P56524 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.65■□□□□ 0.9
HDAC4P56524 SOX15-203ENST00000570788 1093 ntBASIC20.65■□□□□ 0.9
HDAC4P56524 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.65■□□□□ 0.9
HDAC4P56524 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.65■□□□□ 0.9
HDAC4P56524 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC4P56524 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
HDAC4P56524 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.65■□□□□ 0.9
HDAC4P56524 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
HDAC4P56524 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HDAC4P56524 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.65■□□□□ 0.9
HDAC4P56524 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC20.65■□□□□ 0.9
HDAC4P56524 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HDAC4P56524 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HDAC4P56524 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HDAC4P56524 AP001271.2-201ENST00000624018 1556 ntBASIC20.64■□□□□ 0.9
HDAC4P56524 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms