Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.39■□□□□ 0.69
PKNOX1P55347 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC19.39■□□□□ 0.69
PKNOX1P55347 AC105020.6-201ENST00000621523 1217 ntBASIC19.39■□□□□ 0.69
PKNOX1P55347 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PKNOX1P55347 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PKNOX1P55347 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.39■□□□□ 0.69
PKNOX1P55347 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PKNOX1P55347 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
PKNOX1P55347 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PKNOX1P55347 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.39■□□□□ 0.69
PKNOX1P55347 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.39■□□□□ 0.69
PKNOX1P55347 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
PKNOX1P55347 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.39■□□□□ 0.69
PKNOX1P55347 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.39■□□□□ 0.69
PKNOX1P55347 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC19.39■□□□□ 0.69
PKNOX1P55347 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
PKNOX1P55347 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.38■□□□□ 0.69
PKNOX1P55347 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
PKNOX1P55347 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PKNOX1P55347 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PKNOX1P55347 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PKNOX1P55347 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PKNOX1P55347 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PKNOX1P55347 KRT18P68-201ENST00000392293 1000 ntBASIC19.38■□□□□ 0.69
PKNOX1P55347 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PKNOX1P55347 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.38■□□□□ 0.69
PKNOX1P55347 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.38■□□□□ 0.69
PKNOX1P55347 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.38■□□□□ 0.69
PKNOX1P55347 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PKNOX1P55347 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.38■□□□□ 0.69
PKNOX1P55347 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.38■□□□□ 0.69
PKNOX1P55347 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PKNOX1P55347 AL031963.3-201ENST00000606441 850 ntBASIC19.38■□□□□ 0.69
PKNOX1P55347 AC005332.7-201ENST00000614046 2005 ntBASIC19.38■□□□□ 0.69
PKNOX1P55347 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
PKNOX1P55347 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PKNOX1P55347 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
PKNOX1P55347 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.37■□□□□ 0.69
PKNOX1P55347 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.37■□□□□ 0.69
PKNOX1P55347 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PKNOX1P55347 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PKNOX1P55347 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.37■□□□□ 0.69
PKNOX1P55347 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PKNOX1P55347 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PKNOX1P55347 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PKNOX1P55347 AC009237.14-201ENST00000609975 1594 ntBASIC19.37■□□□□ 0.69
PKNOX1P55347 KRT16P6-202ENST00000425692 1426 ntBASIC19.37■□□□□ 0.69
PKNOX1P55347 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PKNOX1P55347 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PKNOX1P55347 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
PKNOX1P55347 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
PKNOX1P55347 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
PKNOX1P55347 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.37■□□□□ 0.69
PKNOX1P55347 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.37■□□□□ 0.69
PKNOX1P55347 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.37■□□□□ 0.69
PKNOX1P55347 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PKNOX1P55347 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
PKNOX1P55347 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PKNOX1P55347 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.37■□□□□ 0.69
PKNOX1P55347 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.37■□□□□ 0.69
PKNOX1P55347 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.37■□□□□ 0.69
PKNOX1P55347 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
PKNOX1P55347 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.36■□□□□ 0.69
PKNOX1P55347 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
PKNOX1P55347 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.36■□□□□ 0.69
PKNOX1P55347 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC19.36■□□□□ 0.69
PKNOX1P55347 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.36■□□□□ 0.69
PKNOX1P55347 AC006015.1-201ENST00000429970 570 ntBASIC19.36■□□□□ 0.69
PKNOX1P55347 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.36■□□□□ 0.69
PKNOX1P55347 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.36■□□□□ 0.69
PKNOX1P55347 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.36■□□□□ 0.69
PKNOX1P55347 AC069236.1-201ENST00000604339 616 ntBASIC19.36■□□□□ 0.69
PKNOX1P55347 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.36■□□□□ 0.69
PKNOX1P55347 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.36■□□□□ 0.69
PKNOX1P55347 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.36■□□□□ 0.69
PKNOX1P55347 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC19.36■□□□□ 0.69
PKNOX1P55347 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PKNOX1P55347 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
PKNOX1P55347 AC120498.9-201ENST00000339021 3867 ntBASIC19.35■□□□□ 0.69
PKNOX1P55347 KRT8P20-201ENST00000423953 1409 ntBASIC19.35■□□□□ 0.69
PKNOX1P55347 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PKNOX1P55347 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
PKNOX1P55347 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PKNOX1P55347 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
PKNOX1P55347 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PKNOX1P55347 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms