Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 AL121906.2-201ENST00000621597 723 ntBASIC20.61■□□□□ 0.89
PTPN9P43378 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.61■□□□□ 0.89
PTPN9P43378 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
PTPN9P43378 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.61■□□□□ 0.89
PTPN9P43378 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.61■□□□□ 0.89
PTPN9P43378 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.61■□□□□ 0.89
PTPN9P43378 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.61■□□□□ 0.89
PTPN9P43378 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
PTPN9P43378 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.6■□□□□ 0.89
PTPN9P43378 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.6■□□□□ 0.89
PTPN9P43378 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
PTPN9P43378 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.6■□□□□ 0.89
PTPN9P43378 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
PTPN9P43378 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.6■□□□□ 0.89
PTPN9P43378 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.6■□□□□ 0.89
PTPN9P43378 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
PTPN9P43378 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PTPN9P43378 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
PTPN9P43378 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN9P43378 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN9P43378 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.59■□□□□ 0.89
PTPN9P43378 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN9P43378 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.59■□□□□ 0.89
PTPN9P43378 POM121L13P-201ENST00000422362 380 ntBASIC20.59■□□□□ 0.89
PTPN9P43378 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN9P43378 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.59■□□□□ 0.89
PTPN9P43378 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.59■□□□□ 0.89
PTPN9P43378 AP003097.1-201ENST00000530657 1135 ntBASIC20.59■□□□□ 0.89
PTPN9P43378 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.59■□□□□ 0.89
PTPN9P43378 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN9P43378 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC20.59■□□□□ 0.89
PTPN9P43378 AL121829.2-201ENST00000620908 328 ntBASIC20.59■□□□□ 0.89
PTPN9P43378 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN9P43378 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
PTPN9P43378 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.59■□□□□ 0.89
PTPN9P43378 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN9P43378 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN9P43378 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.59■□□□□ 0.89
PTPN9P43378 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN9P43378 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN9P43378 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN9P43378 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN9P43378 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.58■□□□□ 0.89
PTPN9P43378 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN9P43378 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
PTPN9P43378 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN9P43378 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN9P43378 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.58■□□□□ 0.89
PTPN9P43378 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.58■□□□□ 0.89
PTPN9P43378 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN9P43378 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
PTPN9P43378 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN9P43378 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.58■□□□□ 0.89
PTPN9P43378 AC026366.1-201ENST00000488803 879 ntBASIC20.58■□□□□ 0.89
PTPN9P43378 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN9P43378 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.58■□□□□ 0.89
PTPN9P43378 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.58■□□□□ 0.89
PTPN9P43378 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.58■□□□□ 0.89
PTPN9P43378 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.58■□□□□ 0.89
PTPN9P43378 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PTPN9P43378 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PTPN9P43378 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
PTPN9P43378 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PTPN9P43378 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
PTPN9P43378 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
PTPN9P43378 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PTPN9P43378 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
PTPN9P43378 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.58■□□□□ 0.88
PTPN9P43378 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PTPN9P43378 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
PTPN9P43378 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.57■□□□□ 0.88
PTPN9P43378 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.57■□□□□ 0.88
PTPN9P43378 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN9P43378 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
PTPN9P43378 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms