Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 FZD10-202ENST00000539839 3282 ntBASIC18.87■□□□□ 0.61
MSX2P35548 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
MSX2P35548 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSX2P35548 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSX2P35548 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSX2P35548 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSX2P35548 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSX2P35548 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
MSX2P35548 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSX2P35548 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
MSX2P35548 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
MSX2P35548 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSX2P35548 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
MSX2P35548 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
MSX2P35548 AC091799.1-201ENST00000422823 811 ntBASIC18.86■□□□□ 0.61
MSX2P35548 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
MSX2P35548 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSX2P35548 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSX2P35548 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
MSX2P35548 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
MSX2P35548 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.85■□□□□ 0.61
MSX2P35548 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.85■□□□□ 0.61
MSX2P35548 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.85■□□□□ 0.61
MSX2P35548 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 AC010141.2-201ENST00000452426 721 ntBASIC18.85■□□□□ 0.61
MSX2P35548 PBX2P1-201ENST00000493219 1291 ntBASIC18.85■□□□□ 0.61
MSX2P35548 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC18.85■□□□□ 0.61
MSX2P35548 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
MSX2P35548 AL138781.2-201ENST00000617896 1843 ntBASIC18.85■□□□□ 0.61
MSX2P35548 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSX2P35548 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
MSX2P35548 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
MSX2P35548 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX2P35548 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.84■□□□□ 0.61
MSX2P35548 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX2P35548 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.84■□□□□ 0.61
MSX2P35548 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX2P35548 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
MSX2P35548 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.84■□□□□ 0.61
MSX2P35548 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MSX2P35548 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.84■□□□□ 0.61
MSX2P35548 AC007322.3-201ENST00000426526 701 ntBASIC18.84■□□□□ 0.61
MSX2P35548 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.84■□□□□ 0.61
MSX2P35548 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC18.84■□□□□ 0.61
MSX2P35548 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC18.84■□□□□ 0.61
MSX2P35548 AL355001.2-201ENST00000620617 1191 ntBASIC18.84■□□□□ 0.61
MSX2P35548 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX2P35548 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX2P35548 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX2P35548 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX2P35548 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX2P35548 AC009237.14-201ENST00000609975 1594 ntBASIC18.84■□□□□ 0.61
MSX2P35548 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.84■□□□□ 0.61
MSX2P35548 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSX2P35548 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.61
MSX2P35548 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
MSX2P35548 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
MSX2P35548 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
MSX2P35548 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
MSX2P35548 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
MSX2P35548 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.83■□□□□ 0.61
MSX2P35548 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
MSX2P35548 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.83■□□□□ 0.6
MSX2P35548 MTURN-203ENST00000409688 843 ntTSL 2 BASIC18.83■□□□□ 0.6
MSX2P35548 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.83■□□□□ 0.6
MSX2P35548 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC18.83■□□□□ 0.6
MSX2P35548 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.83■□□□□ 0.6
MSX2P35548 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.83■□□□□ 0.6
MSX2P35548 MIR6084-201ENST00000622012 110 ntBASIC18.83■□□□□ 0.6
MSX2P35548 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSX2P35548 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
MSX2P35548 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSX2P35548 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSX2P35548 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSX2P35548 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
MSX2P35548 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSX2P35548 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
MSX2P35548 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSX2P35548 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MSX2P35548 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.83■□□□□ 0.6
MSX2P35548 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.83■□□□□ 0.6
MSX2P35548 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSX2P35548 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
MSX2P35548 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX2P35548 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms