Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
HLA-DMBP28068 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC15.06■□□□□ 0
HLA-DMBP28068 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 AC120498.9-201ENST00000339021 3867 ntBASIC15.06■□□□□ 0
HLA-DMBP28068 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
HLA-DMBP28068 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC15.06■□□□□ 0
HLA-DMBP28068 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC15.06■□□□□ 0
HLA-DMBP28068 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC15.06■□□□□ 0
HLA-DMBP28068 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC15.06■□□□□ 0
HLA-DMBP28068 CROCCP5-201ENST00000436658 830 ntBASIC15.06■□□□□ 0
HLA-DMBP28068 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC15.06■□□□□ 0
HLA-DMBP28068 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC15.06■□□□□ 0
HLA-DMBP28068 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC15.06■□□□□ 0
HLA-DMBP28068 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC15.06■□□□□ 0
HLA-DMBP28068 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC15.06■□□□□ 0
HLA-DMBP28068 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
HLA-DMBP28068 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC15.06■□□□□ 0
HLA-DMBP28068 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HLA-DMBP28068 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.05■□□□□ 0
HLA-DMBP28068 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC15.05■□□□□ 0
HLA-DMBP28068 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC15.05■□□□□ 0
HLA-DMBP28068 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DMBP28068 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DMBP28068 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC15.05■□□□□ 0
HLA-DMBP28068 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DMBP28068 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC15.05■□□□□ 0
HLA-DMBP28068 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HLA-DMBP28068 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DMBP28068 MCRIP2P1-201ENST00000394346 511 ntBASIC15.05■□□□□ -0
HLA-DMBP28068 AC007322.1-201ENST00000426983 750 ntBASIC15.05■□□□□ -0
HLA-DMBP28068 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DMBP28068 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
HLA-DMBP28068 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC15.05■□□□□ -0
HLA-DMBP28068 AL162412.1-201ENST00000567129 965 ntBASIC15.05■□□□□ -0
HLA-DMBP28068 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DMBP28068 AC231657.2-201ENST00000624556 255 ntBASIC15.05■□□□□ -0
HLA-DMBP28068 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DMBP28068 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
HLA-DMBP28068 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DMBP28068 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DMBP28068 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DMBP28068 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DMBP28068 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DMBP28068 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DMBP28068 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC15.05■□□□□ -0
HLA-DMBP28068 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.05■□□□□ -0
HLA-DMBP28068 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DMBP28068 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DMBP28068 AC093484.2-201ENST00000580996 2166 ntBASIC15.05■□□□□ -0
HLA-DMBP28068 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
HLA-DMBP28068 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC15.05■□□□□ -0
HLA-DMBP28068 AC098818.2-201ENST00000564925 2320 ntBASIC15.05■□□□□ -0
HLA-DMBP28068 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DMBP28068 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC15.05■□□□□ -0
HLA-DMBP28068 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC15.05■□□□□ -0
HLA-DMBP28068 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC15.04■□□□□ -0
HLA-DMBP28068 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DMBP28068 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
HLA-DMBP28068 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC15.04■□□□□ -0
HLA-DMBP28068 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC15.04■□□□□ -0
HLA-DMBP28068 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DMBP28068 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DMBP28068 KRT8P17-201ENST00000453110 1448 ntBASIC15.04■□□□□ -0
HLA-DMBP28068 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DMBP28068 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DMBP28068 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
HLA-DMBP28068 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DMBP28068 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC15.04■□□□□ -0
HLA-DMBP28068 MAZ-216ENST00000616501 991 ntTSL 5 BASIC15.04■□□□□ -0
HLA-DMBP28068 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DMBP28068 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DMBP28068 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC15.04■□□□□ -0
HLA-DMBP28068 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC15.04■□□□□ -0
HLA-DMBP28068 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HLA-DMBP28068 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC15.04■□□□□ -0
HLA-DMBP28068 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DMBP28068 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC15.03■□□□□ -0
HLA-DMBP28068 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DMBP28068 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DMBP28068 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC15.03■□□□□ -0
HLA-DMBP28068 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HLA-DMBP28068 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
HLA-DMBP28068 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms