Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC15.34■□□□□ 0.05
CXCL1P09341 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL1P09341 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.34■□□□□ 0.05
CXCL1P09341 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
CXCL1P09341 AC090164.3-201ENST00000610780 2143 ntBASIC15.34■□□□□ 0.05
CXCL1P09341 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
CXCL1P09341 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL1P09341 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CXCL1P09341 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL1P09341 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL1P09341 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL1P09341 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL1P09341 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC15.33■□□□□ 0.05
CXCL1P09341 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL1P09341 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.05
CXCL1P09341 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CXCL1P09341 STK25-204ENST00000405585 1643 ntTSL 2 BASIC15.33■□□□□ 0.04
CXCL1P09341 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL1P09341 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
CXCL1P09341 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC15.33■□□□□ 0.04
CXCL1P09341 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL1P09341 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
CXCL1P09341 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC15.33■□□□□ 0.04
CXCL1P09341 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL1P09341 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC15.33■□□□□ 0.04
CXCL1P09341 DUX4L19-201ENST00000557448 1267 ntBASIC15.33■□□□□ 0.04
CXCL1P09341 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL1P09341 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL1P09341 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC15.33■□□□□ 0.04
CXCL1P09341 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.33■□□□□ 0.04
CXCL1P09341 AL139384.1-201ENST00000612143 3047 ntBASIC15.33■□□□□ 0.04
CXCL1P09341 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
CXCL1P09341 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL1P09341 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL1P09341 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL1P09341 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CXCL1P09341 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CXCL1P09341 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL1P09341 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
CXCL1P09341 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL1P09341 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CXCL1P09341 BICD1-207ENST00000551848 1962 ntBASIC15.33■□□□□ 0.04
CXCL1P09341 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
CXCL1P09341 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CXCL1P09341 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL1P09341 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL1P09341 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL1P09341 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL1P09341 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC15.32■□□□□ 0.04
CXCL1P09341 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC15.32■□□□□ 0.04
CXCL1P09341 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC15.32■□□□□ 0.04
CXCL1P09341 AC136469.2-201ENST00000623944 1028 ntBASIC15.32■□□□□ 0.04
CXCL1P09341 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC15.32■□□□□ 0.04
CXCL1P09341 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL1P09341 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CXCL1P09341 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL1P09341 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL1P09341 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.32■□□□□ 0.04
CXCL1P09341 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CXCL1P09341 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL1P09341 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC15.32■□□□□ 0.04
CXCL1P09341 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL1P09341 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC15.32■□□□□ 0.04
CXCL1P09341 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL1P09341 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CXCL1P09341 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
CXCL1P09341 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
CXCL1P09341 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC15.31■□□□□ 0.04
CXCL1P09341 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC15.31■□□□□ 0.04
CXCL1P09341 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
CXCL1P09341 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CXCL1P09341 PTCHD3P2-201ENST00000424937 1205 ntBASIC15.31■□□□□ 0.04
CXCL1P09341 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.31■□□□□ 0.04
CXCL1P09341 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC15.31■□□□□ 0.04
CXCL1P09341 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC15.31■□□□□ 0.04
CXCL1P09341 STX6-204ENST00000542060 4809 ntTSL 2 BASIC15.31■□□□□ 0.04
CXCL1P09341 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CXCL1P09341 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.31■□□□□ 0.04
CXCL1P09341 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC15.3■□□□□ 0.04
CXCL1P09341 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL1P09341 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL1P09341 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL1P09341 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CXCL1P09341 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms