Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
LDLRP01130 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LDLRP01130 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LDLRP01130 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
LDLRP01130 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
LDLRP01130 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LDLRP01130 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
LDLRP01130 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.05■□□□□ 0.64
LDLRP01130 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
LDLRP01130 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.05■□□□□ 0.64
LDLRP01130 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LDLRP01130 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.05■□□□□ 0.64
LDLRP01130 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.05■□□□□ 0.64
LDLRP01130 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.05■□□□□ 0.64
LDLRP01130 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LDLRP01130 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
LDLRP01130 AC083880.1-201ENST00000608266 535 ntBASIC19.05■□□□□ 0.64
LDLRP01130 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC19.05■□□□□ 0.64
LDLRP01130 OR10C1-204ENST00000622521 1039 ntBASIC19.05■□□□□ 0.64
LDLRP01130 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.05■□□□□ 0.64
LDLRP01130 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LDLRP01130 AIRN-201ENST00000601203 4374 ntBASIC19.05■□□□□ 0.64
LDLRP01130 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
LDLRP01130 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LDLRP01130 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LDLRP01130 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
LDLRP01130 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC19.04■□□□□ 0.64
LDLRP01130 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LDLRP01130 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LDLRP01130 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
LDLRP01130 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LDLRP01130 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.04■□□□□ 0.64
LDLRP01130 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.04■□□□□ 0.64
LDLRP01130 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LDLRP01130 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC19.04■□□□□ 0.64
LDLRP01130 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LDLRP01130 TERF1P5-201ENST00000477545 1207 ntBASIC19.04■□□□□ 0.64
LDLRP01130 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.04■□□□□ 0.64
LDLRP01130 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.04■□□□□ 0.64
LDLRP01130 AC138907.5-202ENST00000569484 235 ntBASIC19.04■□□□□ 0.64
LDLRP01130 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
LDLRP01130 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LDLRP01130 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.04■□□□□ 0.64
LDLRP01130 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.04■□□□□ 0.64
LDLRP01130 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
LDLRP01130 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
LDLRP01130 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.04■□□□□ 0.64
LDLRP01130 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.03■□□□□ 0.64
LDLRP01130 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LDLRP01130 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
LDLRP01130 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.03■□□□□ 0.64
LDLRP01130 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LDLRP01130 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.03■□□□□ 0.64
LDLRP01130 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LDLRP01130 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LDLRP01130 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.03■□□□□ 0.64
LDLRP01130 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
LDLRP01130 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LDLRP01130 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.03■□□□□ 0.64
LDLRP01130 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LDLRP01130 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.03■□□□□ 0.64
LDLRP01130 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
LDLRP01130 AC006058.3-201ENST00000606217 1069 ntBASIC19.03■□□□□ 0.64
LDLRP01130 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.03■□□□□ 0.64
LDLRP01130 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.03■□□□□ 0.64
LDLRP01130 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LDLRP01130 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
LDLRP01130 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.03■□□□□ 0.64
LDLRP01130 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
LDLRP01130 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDLRP01130 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LDLRP01130 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDLRP01130 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDLRP01130 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC19.02■□□□□ 0.64
LDLRP01130 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.02■□□□□ 0.64
LDLRP01130 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.02■□□□□ 0.64
LDLRP01130 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDLRP01130 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.02■□□□□ 0.64
LDLRP01130 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.02■□□□□ 0.64
LDLRP01130 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
LDLRP01130 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.02■□□□□ 0.64
LDLRP01130 AL512625.2-201ENST00000417533 625 ntBASIC19.02■□□□□ 0.64
LDLRP01130 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDLRP01130 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.02■□□□□ 0.64
LDLRP01130 AC128676.1-201ENST00000454392 318 ntBASIC19.02■□□□□ 0.64
LDLRP01130 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC19.02■□□□□ 0.64
LDLRP01130 AC007322.4-201ENST00000509611 723 ntBASIC19.02■□□□□ 0.64
LDLRP01130 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.02■□□□□ 0.64
LDLRP01130 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.02■□□□□ 0.64
LDLRP01130 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDLRP01130 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDLRP01130 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDLRP01130 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
LDLRP01130 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
LDLRP01130 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
LDLRP01130 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
LDLRP01130 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC19.02■□□□□ 0.64
LDLRP01130 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
LDLRP01130 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
LDLRP01130 AC004408.2-201ENST00000623613 2777 ntBASIC19.02■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms