Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SEMA3DO95025 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.96■□□□□ 0.63
SEMA3DO95025 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SEMA3DO95025 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.95■□□□□ 0.62
SEMA3DO95025 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SEMA3DO95025 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SEMA3DO95025 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SEMA3DO95025 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.95■□□□□ 0.62
SEMA3DO95025 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.95■□□□□ 0.62
SEMA3DO95025 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.95■□□□□ 0.62
SEMA3DO95025 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.95■□□□□ 0.62
SEMA3DO95025 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SEMA3DO95025 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SEMA3DO95025 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.95■□□□□ 0.62
SEMA3DO95025 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.95■□□□□ 0.62
SEMA3DO95025 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.95■□□□□ 0.62
SEMA3DO95025 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.95■□□□□ 0.62
SEMA3DO95025 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.95■□□□□ 0.62
SEMA3DO95025 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.95■□□□□ 0.62
SEMA3DO95025 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.95■□□□□ 0.62
SEMA3DO95025 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.95■□□□□ 0.62
SEMA3DO95025 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SEMA3DO95025 PHGDH-210ENST00000641115 1638 ntBASIC18.95■□□□□ 0.62
SEMA3DO95025 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.95■□□□□ 0.62
SEMA3DO95025 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SEMA3DO95025 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
SEMA3DO95025 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.95■□□□□ 0.62
SEMA3DO95025 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
SEMA3DO95025 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
SEMA3DO95025 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SEMA3DO95025 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SEMA3DO95025 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SEMA3DO95025 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.94■□□□□ 0.62
SEMA3DO95025 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.94■□□□□ 0.62
SEMA3DO95025 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.94■□□□□ 0.62
SEMA3DO95025 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SEMA3DO95025 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.94■□□□□ 0.62
SEMA3DO95025 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.94■□□□□ 0.62
SEMA3DO95025 AC090192.1-201ENST00000517740 490 ntBASIC18.94■□□□□ 0.62
SEMA3DO95025 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.94■□□□□ 0.62
SEMA3DO95025 AC005829.2-201ENST00000571422 1056 ntBASIC18.94■□□□□ 0.62
SEMA3DO95025 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
SEMA3DO95025 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.94■□□□□ 0.62
SEMA3DO95025 AL109923.1-201ENST00000618799 583 ntBASIC18.94■□□□□ 0.62
SEMA3DO95025 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.94■□□□□ 0.62
SEMA3DO95025 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SEMA3DO95025 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.94■□□□□ 0.62
SEMA3DO95025 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.94■□□□□ 0.62
SEMA3DO95025 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.94■□□□□ 0.62
SEMA3DO95025 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SEMA3DO95025 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SEMA3DO95025 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SEMA3DO95025 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SEMA3DO95025 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SEMA3DO95025 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
SEMA3DO95025 AFG3L1P-217ENST00000557444 2447 ntBASIC18.93■□□□□ 0.62
SEMA3DO95025 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SEMA3DO95025 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.93■□□□□ 0.62
SEMA3DO95025 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SEMA3DO95025 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
SEMA3DO95025 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.93■□□□□ 0.62
SEMA3DO95025 AL390719.1-204ENST00000412397 1219 ntBASIC18.93■□□□□ 0.62
SEMA3DO95025 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.93■□□□□ 0.62
SEMA3DO95025 AC097658.1-201ENST00000475555 843 ntBASIC18.93■□□□□ 0.62
SEMA3DO95025 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SEMA3DO95025 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.93■□□□□ 0.62
SEMA3DO95025 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.93■□□□□ 0.62
SEMA3DO95025 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC18.93■□□□□ 0.62
SEMA3DO95025 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SEMA3DO95025 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
SEMA3DO95025 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SEMA3DO95025 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.93■□□□□ 0.62
SEMA3DO95025 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.93■□□□□ 0.62
SEMA3DO95025 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
SEMA3DO95025 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SEMA3DO95025 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SEMA3DO95025 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.93■□□□□ 0.62
SEMA3DO95025 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SEMA3DO95025 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SEMA3DO95025 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SEMA3DO95025 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
SEMA3DO95025 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.93■□□□□ 0.62
SEMA3DO95025 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SEMA3DO95025 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.92■□□□□ 0.62
SEMA3DO95025 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.92■□□□□ 0.62
SEMA3DO95025 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC18.92■□□□□ 0.62
SEMA3DO95025 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SEMA3DO95025 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.92■□□□□ 0.62
SEMA3DO95025 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms