Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
SHOX2O60902 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.84■□□□□ 0.77
SHOX2O60902 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.84■□□□□ 0.77
SHOX2O60902 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.84■□□□□ 0.77
SHOX2O60902 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SHOX2O60902 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHOX2O60902 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHOX2O60902 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SHOX2O60902 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SHOX2O60902 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHOX2O60902 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SHOX2O60902 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC19.83■□□□□ 0.77
SHOX2O60902 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHOX2O60902 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.83■□□□□ 0.77
SHOX2O60902 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.83■□□□□ 0.77
SHOX2O60902 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHOX2O60902 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHOX2O60902 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SHOX2O60902 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.83■□□□□ 0.77
SHOX2O60902 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHOX2O60902 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHOX2O60902 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHOX2O60902 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHOX2O60902 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHOX2O60902 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.83■□□□□ 0.77
SHOX2O60902 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.83■□□□□ 0.77
SHOX2O60902 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.83■□□□□ 0.77
SHOX2O60902 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SHOX2O60902 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
SHOX2O60902 AL035685.1-201ENST00000636663 812 ntBASIC19.83■□□□□ 0.77
SHOX2O60902 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
SHOX2O60902 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SHOX2O60902 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.83■□□□□ 0.76
SHOX2O60902 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SHOX2O60902 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.83■□□□□ 0.76
SHOX2O60902 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHOX2O60902 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHOX2O60902 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC19.82■□□□□ 0.76
SHOX2O60902 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHOX2O60902 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHOX2O60902 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHOX2O60902 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.82■□□□□ 0.76
SHOX2O60902 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHOX2O60902 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHOX2O60902 EEF1DP3-203ENST00000566025 782 ntBASIC19.82■□□□□ 0.76
SHOX2O60902 AL356740.2-201ENST00000601559 647 ntBASIC19.82■□□□□ 0.76
SHOX2O60902 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC19.82■□□□□ 0.76
SHOX2O60902 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.82■□□□□ 0.76
SHOX2O60902 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SHOX2O60902 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.82■□□□□ 0.76
SHOX2O60902 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SHOX2O60902 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOX2O60902 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHOX2O60902 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
SHOX2O60902 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOX2O60902 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOX2O60902 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SHOX2O60902 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOX2O60902 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOX2O60902 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOX2O60902 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SHOX2O60902 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.81■□□□□ 0.76
SHOX2O60902 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.81■□□□□ 0.76
SHOX2O60902 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHOX2O60902 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.81■□□□□ 0.76
SHOX2O60902 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.81■□□□□ 0.76
SHOX2O60902 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOX2O60902 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.81■□□□□ 0.76
SHOX2O60902 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SHOX2O60902 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOX2O60902 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SHOX2O60902 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.8■□□□□ 0.76
SHOX2O60902 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.8■□□□□ 0.76
SHOX2O60902 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.8■□□□□ 0.76
SHOX2O60902 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 AC099398.1-201ENST00000567919 2776 ntBASIC19.8■□□□□ 0.76
SHOX2O60902 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.8■□□□□ 0.76
SHOX2O60902 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.8■□□□□ 0.76
SHOX2O60902 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SHOX2O60902 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.8■□□□□ 0.76
SHOX2O60902 AC053503.5-201ENST00000601508 636 ntBASIC19.8■□□□□ 0.76
SHOX2O60902 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.8■□□□□ 0.76
SHOX2O60902 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.8■□□□□ 0.76
SHOX2O60902 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
SHOX2O60902 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC19.8■□□□□ 0.76
SHOX2O60902 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SHOX2O60902 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms