Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPSF4LA6NMK7 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPSF4LA6NMK7 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.25■□□□□ 0.51
CPSF4LA6NMK7 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
CPSF4LA6NMK7 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPSF4LA6NMK7 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CPSF4LA6NMK7 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CPSF4LA6NMK7 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
CPSF4LA6NMK7 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.24■□□□□ 0.51
CPSF4LA6NMK7 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 AC009237.14-201ENST00000609975 1594 ntBASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 MIR5787-201ENST00000611784 55 ntBASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 AC010980.2-201ENST00000587099 1412 ntBASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CPSF4LA6NMK7 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.22■□□□□ 0.51
CPSF4LA6NMK7 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 AC093484.2-201ENST00000580996 2166 ntBASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 HLA-G-202ENST00000376815 851 ntBASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 HLA-G-203ENST00000376818 1127 ntBASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 AC093787.1-201ENST00000450396 207 ntBASIC18.21■□□□□ 0.51
CPSF4LA6NMK7 AL589743.5-201ENST00000616611 1050 ntBASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms