Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
HMGA1P17096 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.58□□□□□ -1.36
HMGA1P17096 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
HMGA1P17096 KNG1-201ENST00000265023 3435 ntAPPRIS ALT1 TSL 2 BASIC6.57□□□□□ -1.36
HMGA1P17096 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 DPCR1-201ENST00000304311 2658 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
HMGA1P17096 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
HMGA1P17096 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.57□□□□□ -1.36
HMGA1P17096 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 GABRR1-203ENST00000454853 2820 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
HMGA1P17096 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
HMGA1P17096 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 MT4-201ENST00000219162 294 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 RNU1-49P-201ENST00000363468 159 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 MIR130B-202ENST00000385018 82 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 HSD17B7P1-201ENST00000412419 1017 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.57□□□□□ -1.36
HMGA1P17096 AC009500.1-201ENST00000420684 583 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 AL389925.1-201ENST00000432257 728 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 RPL6P30-201ENST00000443382 862 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 AC011742.2-201ENST00000443818 352 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC6.57□□□□□ -1.36
HMGA1P17096 AC016724.1-201ENST00000453215 421 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 PPIAP27-201ENST00000453800 265 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 AL158068.1-201ENST00000506116 616 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGA1P17096 AC010343.2-201ENST00000510162 224 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 AC027369.2-201ENST00000528030 440 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGA1P17096 TRIM51DP-201ENST00000529746 596 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 NANOGNBP2-201ENST00000544753 553 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 AL158058.1-201ENST00000549515 647 ntTSL 2 BASIC6.57□□□□□ -1.36
HMGA1P17096 LINC00556-201ENST00000569603 412 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGA1P17096 AC012370.2-201ENST00000597541 1080 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGA1P17096 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC6.57□□□□□ -1.36
HMGA1P17096 AL138895.2-201ENST00000603019 178 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC6.57□□□□□ -1.36
HMGA1P17096 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGA1P17096 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC6.57□□□□□ -1.36
HMGA1P17096 AC024884.1-201ENST00000620583 399 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC6.57□□□□□ -1.36
HMGA1P17096 PSMD10P2-203ENST00000627340 914 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGA1P17096 MAPK10-365ENST00000641902 3825 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 AP002364.1-201ENST00000623330 3386 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 CASP12-212ENST00000613512 1451 ntAPPRIS P5 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC6.57□□□□□ -1.36
HMGA1P17096 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 LPAL2-203ENST00000454031 2498 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6.57□□□□□ -1.36
HMGA1P17096 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 AC013488.1-201ENST00000526618 1838 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 AC020978.8-201ENST00000571975 3022 ntBASIC6.57□□□□□ -1.36
HMGA1P17096 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.57□□□□□ -1.36
HMGA1P17096 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
HMGA1P17096 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.57□□□□□ -1.36
HMGA1P17096 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.56□□□□□ -1.36
HMGA1P17096 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC6.56□□□□□ -1.36
HMGA1P17096 IL31RA-203ENST00000359040 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
HMGA1P17096 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.56□□□□□ -1.36
HMGA1P17096 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
HMGA1P17096 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
HMGA1P17096 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
HMGA1P17096 MAPK10-287ENST00000641217 3037 ntBASIC6.56□□□□□ -1.36
HMGA1P17096 AC092111.1-201ENST00000618256 3358 ntBASIC6.56□□□□□ -1.36
HMGA1P17096 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
HMGA1P17096 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
HMGA1P17096 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC6.56□□□□□ -1.36
HMGA1P17096 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
HMGA1P17096 CCL20-202ENST00000409189 839 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
HMGA1P17096 RN7SKP144-201ENST00000411108 279 ntBASIC6.56□□□□□ -1.36
HMGA1P17096 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC6.56□□□□□ -1.36
HMGA1P17096 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC6.56□□□□□ -1.36
HMGA1P17096 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.56□□□□□ -1.36
HMGA1P17096 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
HMGA1P17096 PPIAP10-201ENST00000438675 458 ntBASIC6.56□□□□□ -1.36
HMGA1P17096 AL353662.1-201ENST00000439099 327 ntBASIC6.56□□□□□ -1.36
HMGA1P17096 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC6.56□□□□□ -1.36
HMGA1P17096 MGAT2P1-201ENST00000449718 797 ntBASIC6.56□□□□□ -1.36
HMGA1P17096 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC6.56□□□□□ -1.36
HMGA1P17096 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC6.56□□□□□ -1.36
HMGA1P17096 SUMO2P7-201ENST00000511179 285 ntBASIC6.56□□□□□ -1.36
HMGA1P17096 TRIM77BP-201ENST00000524985 1119 ntBASIC6.56□□□□□ -1.36
HMGA1P17096 ASB8-203ENST00000535988 679 ntTSL 2 BASIC6.56□□□□□ -1.36
HMGA1P17096 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC6.56□□□□□ -1.36
HMGA1P17096 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC6.56□□□□□ -1.36
HMGA1P17096 AC079905.1-201ENST00000549280 475 ntBASIC6.56□□□□□ -1.36
HMGA1P17096 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 311.8 ms