Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 OR52K3P-201ENST00000531655 943 ntBASIC5.73□□□□□ -1.49
NKX3-1Q99801 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 AL049870.3-201ENST00000555157 360 ntTSL 2 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 AC022001.1-201ENST00000605193 268 ntBASIC5.73□□□□□ -1.49
NKX3-1Q99801 TP53TG1_2.1-201ENST00000611226 182 ntBASIC5.73□□□□□ -1.49
NKX3-1Q99801 Six3os1_4.1-201ENST00000615706 324 ntBASIC5.73□□□□□ -1.49
NKX3-1Q99801 MRPL57P1-201ENST00000621486 265 ntBASIC5.73□□□□□ -1.49
NKX3-1Q99801 MIR665-201ENST00000635949 72 ntBASIC5.73□□□□□ -1.49
NKX3-1Q99801 DMD-222ENST00000474231 5209 ntTSL 5 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC5.73□□□□□ -1.49
NKX3-1Q99801 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
NKX3-1Q99801 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 MATR3-215ENST00000510056 3040 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 UVRAG-205ENST00000528420 2463 ntTSL 2 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 MT1A-201ENST00000290705 396 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 SMPX-201ENST00000379494 938 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 MIR187-201ENST00000385062 109 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 RNA5SP176-201ENST00000390956 110 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 PDCL3P5-201ENST00000398028 722 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 ZNF37CP-201ENST00000406795 241 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 SOD1P1-201ENST00000407803 440 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 MTATP6P19-201ENST00000413797 659 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 MEG8-201ENST00000414488 800 ntTSL 3 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC091492.1-201ENST00000419844 272 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC016745.1-201ENST00000422178 508 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 ETDB-201ENST00000423661 681 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 GAPDHP69-201ENST00000425504 1008 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 ETDB-202ENST00000426364 388 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 ETDA-201ENST00000427686 607 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 MRPS21P3-201ENST00000436696 262 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 MYL6P3-201ENST00000436904 432 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AL391361.2-203ENST00000443380 413 ntTSL 2 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 ZNF197-AS1-201ENST00000447691 623 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC068759.1-201ENST00000447709 470 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 LINC01839-201ENST00000451348 727 ntTSL 3 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 ETDA-202ENST00000454551 388 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AL356364.1-201ENST00000458443 182 ntTSL 3 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 RPL23AP64-201ENST00000469465 435 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 SNX18P23-201ENST00000510867 677 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC020980.1-201ENST00000513041 458 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 LINC02055-203ENST00000520068 712 ntTSL 2 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 LDHC-204ENST00000536880 957 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 ELK3-206ENST00000552142 1242 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC079385.3-201ENST00000552415 809 ntTSL 3 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC089984.3-201ENST00000552838 363 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC013652.1-204ENST00000558209 489 ntTSL 3 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC091932.1-201ENST00000569381 427 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AL445465.1-206ENST00000609544 528 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 LINC01141-204ENST00000635564 1008 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 PARP4P1-201ENST00000435945 2337 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC009135.2-201ENST00000624136 1768 ntBASIC5.72□□□□□ -1.49
NKX3-1Q99801 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 AC007744.1-201ENST00000607540 2289 ntTSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
NKX3-1Q99801 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
NKX3-1Q99801 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
NKX3-1Q99801 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
NKX3-1Q99801 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
NKX3-1Q99801 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.49
NKX3-1Q99801 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
NKX3-1Q99801 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.49
NKX3-1Q99801 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.71□□□□□ -1.49
NKX3-1Q99801 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
NKX3-1Q99801 TRIM53CP-201ENST00000531490 1354 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms