Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 COL11A2P1-205ENST00000441798 676 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 RBMY2AP-201ENST00000445405 1157 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 UBBP5-201ENST00000446970 266 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 RBMY2CP-201ENST00000448575 1157 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 RBMY2DP-202ENST00000448881 1157 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 AC017007.3-201ENST00000479865 435 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 AC026826.1-201ENST00000493002 361 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 RN7SL362P-201ENST00000494228 267 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 PABPC1P1-201ENST00000506347 591 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 AC093664.1-201ENST00000511779 289 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 GTF2IP11-201ENST00000526931 420 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 LINC02207-201ENST00000554530 1256 ntTSL 5 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 OFCC1-218ENST00000622909 754 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 AC063952.1-203ENST00000634410 658 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 OR2AH1P-202ENST00000641232 2744 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 MAPK10-357ENST00000641831 2858 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 AL589993.1-201ENST00000407450 2524 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 PSMC1P4-201ENST00000515236 1327 ntBASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 NPHP1-203ENST00000393272 2752 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 NUMB-217ENST00000555738 1553 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HDDC3Q8N4P3 AC022819.1-201ENST00000563495 3910 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 RACGAP1P-201ENST00000550663 1879 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 SNORA38B-201ENST00000363524 131 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 TRAV35-201ENST00000390462 330 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 SERHL2-204ENST00000407614 521 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 ERMN-202ENST00000409216 746 ntTSL 4 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 RNA5SP431-201ENST00000410312 120 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AL360013.1-201ENST00000419031 858 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 DUTP4-201ENST00000424782 475 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 MORF4L1P5-201ENST00000433352 961 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 NDUFA5P5-201ENST00000468361 342 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AC097501.1-202ENST00000514707 313 ntTSL 3 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AC063977.7-201ENST00000594454 337 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AC114477.1-201ENST00000605097 605 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 DAOA-AS1_1.1-201ENST00000613021 201 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 TSHZ2-205ENST00000626626 670 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 UOX-205ENST00000640983 544 ntTSL 4 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 SMG1P5-202ENST00000529428 4219 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 SMG1P2-201ENST00000566127 4221 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 SORBS1-202ENST00000306402 5858 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 TMCC1P1-201ENST00000518897 1980 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 LINC01613-201ENST00000561476 2780 ntBASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 LINC00517-202ENST00000554257 3460 ntTSL 2 BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 EIF4A2-205ENST00000440191 1889 ntAPPRIS ALT1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HDDC3Q8N4P3 GAPVD1-215ENST00000470056 8923 ntTSL 5 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 OLFM3-201ENST00000338858 2189 ntAPPRIS ALT1 TSL 1 (best) BASIC6.72□□□□□ -1.33
HDDC3Q8N4P3 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms