Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC023632.3-201ENST00000521633 145 ntBASIC21.69■■□□□ 1.06
LIMA1Q9UHB6 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC21.69■■□□□ 1.06
LIMA1Q9UHB6 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.69■■□□□ 1.06
LIMA1Q9UHB6 AL032819.2-201ENST00000624543 2162 ntBASIC21.69■■□□□ 1.06
LIMA1Q9UHB6 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.69■■□□□ 1.06
LIMA1Q9UHB6 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMA1Q9UHB6 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
LIMA1Q9UHB6 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMA1Q9UHB6 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMA1Q9UHB6 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
LIMA1Q9UHB6 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 AC016769.1-201ENST00000409132 1010 ntBASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
LIMA1Q9UHB6 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 AC069236.1-201ENST00000604339 616 ntBASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
LIMA1Q9UHB6 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 C2orf69P4-201ENST00000565394 541 ntBASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
LIMA1Q9UHB6 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 AC010980.2-201ENST00000587099 1412 ntBASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC21.65■■□□□ 1.06
LIMA1Q9UHB6 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
LIMA1Q9UHB6 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LIMA1Q9UHB6 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms