Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SMARCAL1Q9NZC9 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SMARCAL1Q9NZC9 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 AC087633.2-202ENST00000565166 1439 ntBASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 AC009237.14-201ENST00000609975 1594 ntBASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.84■□□□□ 0.93
SMARCAL1Q9NZC9 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 UBE2DNL-204ENST00000602536 740 ntBASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
SMARCAL1Q9NZC9 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SMARCAL1Q9NZC9 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SMARCAL1Q9NZC9 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.83■□□□□ 0.92
SMARCAL1Q9NZC9 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.83■□□□□ 0.92
SMARCAL1Q9NZC9 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SMARCAL1Q9NZC9 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms