Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
CDX2Q99626 FAM99A-202ENST00000538190 1989 ntBASIC20.92■□□□□ 0.94
CDX2Q99626 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CDX2Q99626 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CDX2Q99626 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDX2Q99626 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDX2Q99626 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDX2Q99626 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDX2Q99626 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDX2Q99626 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.91■□□□□ 0.94
CDX2Q99626 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDX2Q99626 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
CDX2Q99626 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.91■□□□□ 0.94
CDX2Q99626 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDX2Q99626 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDX2Q99626 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDX2Q99626 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CDX2Q99626 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.91■□□□□ 0.94
CDX2Q99626 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDX2Q99626 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CDX2Q99626 AC117500.6-201ENST00000624871 588 ntBASIC20.91■□□□□ 0.94
CDX2Q99626 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.91■□□□□ 0.94
CDX2Q99626 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
CDX2Q99626 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC20.9■□□□□ 0.94
CDX2Q99626 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDX2Q99626 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.9■□□□□ 0.94
CDX2Q99626 PREB-202ENST00000406567 1910 ntTSL 5 BASIC20.9■□□□□ 0.94
CDX2Q99626 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDX2Q99626 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.9■□□□□ 0.94
CDX2Q99626 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.9■□□□□ 0.94
CDX2Q99626 KRT8P36-201ENST00000489121 1440 ntBASIC20.9■□□□□ 0.94
CDX2Q99626 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.9■□□□□ 0.94
CDX2Q99626 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDX2Q99626 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDX2Q99626 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDX2Q99626 KRT18P13-201ENST00000400056 1290 ntBASIC20.9■□□□□ 0.94
CDX2Q99626 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CDX2Q99626 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.9■□□□□ 0.94
CDX2Q99626 AC079776.4-201ENST00000511039 504 ntBASIC20.9■□□□□ 0.94
CDX2Q99626 AL671883.3-201ENST00000603274 991 ntBASIC20.9■□□□□ 0.94
CDX2Q99626 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CDX2Q99626 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CDX2Q99626 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.89■□□□□ 0.94
CDX2Q99626 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.89■□□□□ 0.93
CDX2Q99626 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDX2Q99626 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDX2Q99626 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.89■□□□□ 0.93
CDX2Q99626 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.89■□□□□ 0.93
CDX2Q99626 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.89■□□□□ 0.93
CDX2Q99626 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.89■□□□□ 0.93
CDX2Q99626 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CDX2Q99626 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.89■□□□□ 0.93
CDX2Q99626 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.89■□□□□ 0.93
CDX2Q99626 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDX2Q99626 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDX2Q99626 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDX2Q99626 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
CDX2Q99626 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CDX2Q99626 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CDX2Q99626 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.88■□□□□ 0.93
CDX2Q99626 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.88■□□□□ 0.93
CDX2Q99626 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CDX2Q99626 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CDX2Q99626 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDX2Q99626 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDX2Q99626 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDX2Q99626 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDX2Q99626 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDX2Q99626 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC20.88■□□□□ 0.93
CDX2Q99626 STARP1-201ENST00000397973 869 ntBASIC20.88■□□□□ 0.93
CDX2Q99626 RPP21-221ENST00000428040 594 ntTSL 2 BASIC20.88■□□□□ 0.93
CDX2Q99626 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDX2Q99626 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC20.88■□□□□ 0.93
CDX2Q99626 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC20.88■□□□□ 0.93
CDX2Q99626 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDX2Q99626 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
CDX2Q99626 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDX2Q99626 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.88■□□□□ 0.93
CDX2Q99626 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CDX2Q99626 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.88■□□□□ 0.93
CDX2Q99626 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CDX2Q99626 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDX2Q99626 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDX2Q99626 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDX2Q99626 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.87■□□□□ 0.93
CDX2Q99626 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDX2Q99626 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDX2Q99626 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CDX2Q99626 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDX2Q99626 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CDX2Q99626 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC20.87■□□□□ 0.93
CDX2Q99626 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.87■□□□□ 0.93
CDX2Q99626 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CDX2Q99626 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.87■□□□□ 0.93
CDX2Q99626 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.87■□□□□ 0.93
CDX2Q99626 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.87■□□□□ 0.93
CDX2Q99626 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.87■□□□□ 0.93
CDX2Q99626 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.86■□□□□ 0.93
CDX2Q99626 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CDX2Q99626 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms