Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 AC233263.1-201ENST00000578059 224 ntBASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 AC124283.5-201ENST00000624661 1809 ntBASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
PTCHD1Q96NR3 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.71■□□□□ 0.58
PTCHD1Q96NR3 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PTCHD1Q96NR3 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 PCDHAC2-203ENST00000615316 3011 ntBASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PTCHD1Q96NR3 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
PTCHD1Q96NR3 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
PTCHD1Q96NR3 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms