Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HLA-CQ95604 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-CQ95604 PTBP1P-201ENST00000554374 1601 ntBASIC20.65■□□□□ 0.9
HLA-CQ95604 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-CQ95604 AC004870.1-201ENST00000315132 882 ntBASIC20.65■□□□□ 0.9
HLA-CQ95604 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HLA-CQ95604 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.65■□□□□ 0.9
HLA-CQ95604 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.65■□□□□ 0.9
HLA-CQ95604 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.65■□□□□ 0.9
HLA-CQ95604 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.65■□□□□ 0.9
HLA-CQ95604 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-CQ95604 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
HLA-CQ95604 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.65■□□□□ 0.9
HLA-CQ95604 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HLA-CQ95604 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.64■□□□□ 0.9
HLA-CQ95604 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
HLA-CQ95604 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
HLA-CQ95604 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
HLA-CQ95604 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-CQ95604 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-CQ95604 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-CQ95604 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.64■□□□□ 0.89
HLA-CQ95604 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-CQ95604 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-CQ95604 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-CQ95604 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
HLA-CQ95604 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-CQ95604 AL845331.1-201ENST00000424978 1190 ntBASIC20.64■□□□□ 0.89
HLA-CQ95604 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.64■□□□□ 0.89
HLA-CQ95604 YBX1P10-201ENST00000444752 975 ntBASIC20.64■□□□□ 0.89
HLA-CQ95604 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.64■□□□□ 0.89
HLA-CQ95604 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-CQ95604 AL353719.1-201ENST00000566847 864 ntBASIC20.64■□□□□ 0.89
HLA-CQ95604 PRELID1P1-202ENST00000567272 903 ntBASIC20.64■□□□□ 0.89
HLA-CQ95604 BCL10-202ENST00000620248 774 ntTSL 5 BASIC20.64■□□□□ 0.89
HLA-CQ95604 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-CQ95604 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-CQ95604 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
HLA-CQ95604 KRT8P10-201ENST00000450021 1447 ntBASIC20.63■□□□□ 0.89
HLA-CQ95604 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.63■□□□□ 0.89
HLA-CQ95604 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-CQ95604 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.63■□□□□ 0.89
HLA-CQ95604 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.63■□□□□ 0.89
HLA-CQ95604 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.63■□□□□ 0.89
HLA-CQ95604 ZNF444P1-201ENST00000559497 298 ntBASIC20.63■□□□□ 0.89
HLA-CQ95604 MIR3652-201ENST00000579335 131 ntBASIC20.63■□□□□ 0.89
HLA-CQ95604 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC20.63■□□□□ 0.89
HLA-CQ95604 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.63■□□□□ 0.89
HLA-CQ95604 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
HLA-CQ95604 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-CQ95604 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-CQ95604 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.63■□□□□ 0.89
HLA-CQ95604 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.63■□□□□ 0.89
HLA-CQ95604 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-CQ95604 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
HLA-CQ95604 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-CQ95604 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-CQ95604 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.63■□□□□ 0.89
HLA-CQ95604 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-CQ95604 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.63■□□□□ 0.89
HLA-CQ95604 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-CQ95604 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-CQ95604 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.62■□□□□ 0.89
HLA-CQ95604 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-CQ95604 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.62■□□□□ 0.89
HLA-CQ95604 KRT17P6-201ENST00000453795 1220 ntBASIC20.62■□□□□ 0.89
HLA-CQ95604 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-CQ95604 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.62■□□□□ 0.89
HLA-CQ95604 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.62■□□□□ 0.89
HLA-CQ95604 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.62■□□□□ 0.89
HLA-CQ95604 AC111152.3-201ENST00000569699 673 ntBASIC20.62■□□□□ 0.89
HLA-CQ95604 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-CQ95604 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.62■□□□□ 0.89
HLA-CQ95604 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
HLA-CQ95604 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.62■□□□□ 0.89
HLA-CQ95604 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-CQ95604 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
HLA-CQ95604 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HLA-CQ95604 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.62■□□□□ 0.89
HLA-CQ95604 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HLA-CQ95604 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-CQ95604 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-CQ95604 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.61■□□□□ 0.89
HLA-CQ95604 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-CQ95604 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-CQ95604 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-CQ95604 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
HLA-CQ95604 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-CQ95604 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.61■□□□□ 0.89
HLA-CQ95604 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-CQ95604 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-CQ95604 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.61■□□□□ 0.89
HLA-CQ95604 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
HLA-CQ95604 AC112907.2-201ENST00000448639 330 ntBASIC20.61■□□□□ 0.89
HLA-CQ95604 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC20.61■□□□□ 0.89
HLA-CQ95604 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-CQ95604 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.61■□□□□ 0.89
HLA-CQ95604 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HLA-CQ95604 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC20.61■□□□□ 0.89
HLA-CQ95604 AC004263.2-201ENST00000617183 678 ntBASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms