Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ZNF540Q8NDQ6 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.33■□□□□ 0.53
ZNF540Q8NDQ6 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ZNF540Q8NDQ6 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ZNF540Q8NDQ6 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ZNF540Q8NDQ6 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ZNF540Q8NDQ6 Z82202.1-201ENST00000623446 1880 ntBASIC18.33■□□□□ 0.53
ZNF540Q8NDQ6 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ZNF540Q8NDQ6 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ZNF540Q8NDQ6 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 TREX1-205ENST00000625293 1783 ntBASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 AC092437.1-201ENST00000624794 1048 ntBASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ZNF540Q8NDQ6 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 AC061975.6-201ENST00000579045 1553 ntBASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 AC090340.1-201ENST00000620778 4980 ntBASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
ZNF540Q8NDQ6 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 AC016769.1-201ENST00000409132 1010 ntBASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.3■□□□□ 0.52
ZNF540Q8NDQ6 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms