Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 ABHD17AP5-201ENST00000580133 923 ntBASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
CLRN3Q8NCR9 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
CLRN3Q8NCR9 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLRN3Q8NCR9 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLRN3Q8NCR9 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLRN3Q8NCR9 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLRN3Q8NCR9 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLRN3Q8NCR9 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLRN3Q8NCR9 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
CLRN3Q8NCR9 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLRN3Q8NCR9 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.83■□□□□ 0.13
CLRN3Q8NCR9 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CLRN3Q8NCR9 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 AC087393.1-201ENST00000582896 145 ntBASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 REST-206ENST00000612429 1376 ntTSL 5 BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 REST-207ENST00000616975 1370 ntTSL 5 BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC15.83■□□□□ 0.12
CLRN3Q8NCR9 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 AC009831.1-201ENST00000580420 1582 ntBASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
CLRN3Q8NCR9 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CLRN3Q8NCR9 EML3-212ENST00000494176 2901 ntTSL 2 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms