Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC22.8■■□□□ 1.24
SH3RF1Q7Z6J0 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SH3RF1Q7Z6J0 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
SH3RF1Q7Z6J0 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC22.8■■□□□ 1.24
SH3RF1Q7Z6J0 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC22.8■■□□□ 1.24
SH3RF1Q7Z6J0 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC22.8■■□□□ 1.24
SH3RF1Q7Z6J0 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
SH3RF1Q7Z6J0 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC22.8■■□□□ 1.24
SH3RF1Q7Z6J0 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
SH3RF1Q7Z6J0 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
SH3RF1Q7Z6J0 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC22.8■■□□□ 1.24
SH3RF1Q7Z6J0 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
SH3RF1Q7Z6J0 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 AC239809.2-201ENST00000415381 517 ntBASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 AP001412.1-201ENST00000608405 714 ntBASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 SNX21-213ENST00000614929 587 ntTSL 5 BASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC22.79■■□□□ 1.24
SH3RF1Q7Z6J0 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 KRT18P35-201ENST00000510488 1269 ntBASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 AC105020.6-201ENST00000621523 1217 ntBASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
SH3RF1Q7Z6J0 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 TCF3P1-201ENST00000423021 1937 ntBASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 SMG8-203ENST00000578922 2178 ntBASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
SH3RF1Q7Z6J0 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC22.77■■□□□ 1.23
SH3RF1Q7Z6J0 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 AFG3L1P-217ENST00000557444 2447 ntBASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 KRASP1-201ENST00000407852 552 ntBASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 TMPOP1-202ENST00000424642 1267 ntBASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 PENK-204ENST00000518770 863 ntTSL 2 BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 RN7SL850P-201ENST00000579959 291 ntBASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 AC110285.5-201ENST00000611501 352 ntBASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
SH3RF1Q7Z6J0 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC22.75■■□□□ 1.23
SH3RF1Q7Z6J0 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
SH3RF1Q7Z6J0 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
SH3RF1Q7Z6J0 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
SH3RF1Q7Z6J0 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
SH3RF1Q7Z6J0 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC22.75■■□□□ 1.23
SH3RF1Q7Z6J0 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC22.75■■□□□ 1.23
SH3RF1Q7Z6J0 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC22.75■■□□□ 1.23
SH3RF1Q7Z6J0 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
SH3RF1Q7Z6J0 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC22.75■■□□□ 1.23
SH3RF1Q7Z6J0 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
SH3RF1Q7Z6J0 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
SH3RF1Q7Z6J0 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
SH3RF1Q7Z6J0 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC22.75■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms