Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC20.18■□□□□ 0.82
USP39Q53GS9 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.18■□□□□ 0.82
USP39Q53GS9 RN7SL850P-201ENST00000579959 291 ntBASIC20.18■□□□□ 0.82
USP39Q53GS9 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.18■□□□□ 0.82
USP39Q53GS9 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP39Q53GS9 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP39Q53GS9 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP39Q53GS9 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
USP39Q53GS9 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.18■□□□□ 0.82
USP39Q53GS9 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP39Q53GS9 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP39Q53GS9 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP39Q53GS9 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP39Q53GS9 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
USP39Q53GS9 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP39Q53GS9 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP39Q53GS9 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.17■□□□□ 0.82
USP39Q53GS9 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP39Q53GS9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP39Q53GS9 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.17■□□□□ 0.82
USP39Q53GS9 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
USP39Q53GS9 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.17■□□□□ 0.82
USP39Q53GS9 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.17■□□□□ 0.82
USP39Q53GS9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
USP39Q53GS9 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP39Q53GS9 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.17■□□□□ 0.82
USP39Q53GS9 AL121906.2-201ENST00000621597 723 ntBASIC20.17■□□□□ 0.82
USP39Q53GS9 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.17■□□□□ 0.82
USP39Q53GS9 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP39Q53GS9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
USP39Q53GS9 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USP39Q53GS9 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USP39Q53GS9 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC20.16■□□□□ 0.82
USP39Q53GS9 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP39Q53GS9 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.16■□□□□ 0.82
USP39Q53GS9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP39Q53GS9 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP39Q53GS9 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP39Q53GS9 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.16■□□□□ 0.82
USP39Q53GS9 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP39Q53GS9 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP39Q53GS9 ARMC10P1-201ENST00000313754 855 ntBASIC20.16■□□□□ 0.82
USP39Q53GS9 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.16■□□□□ 0.82
USP39Q53GS9 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
USP39Q53GS9 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.16■□□□□ 0.82
USP39Q53GS9 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.16■□□□□ 0.82
USP39Q53GS9 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.16■□□□□ 0.82
USP39Q53GS9 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP39Q53GS9 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP39Q53GS9 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP39Q53GS9 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.16■□□□□ 0.82
USP39Q53GS9 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
USP39Q53GS9 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
USP39Q53GS9 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USP39Q53GS9 AC011484.1-201ENST00000377652 1995 ntBASIC20.15■□□□□ 0.82
USP39Q53GS9 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
USP39Q53GS9 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP39Q53GS9 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.15■□□□□ 0.82
USP39Q53GS9 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
USP39Q53GS9 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP39Q53GS9 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.15■□□□□ 0.82
USP39Q53GS9 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
USP39Q53GS9 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
USP39Q53GS9 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP39Q53GS9 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.15■□□□□ 0.82
USP39Q53GS9 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.15■□□□□ 0.82
USP39Q53GS9 AL049597.2-201ENST00000565575 961 ntBASIC20.15■□□□□ 0.82
USP39Q53GS9 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.15■□□□□ 0.82
USP39Q53GS9 AC005363.2-201ENST00000618631 242 ntBASIC20.15■□□□□ 0.82
USP39Q53GS9 AL590326.2-201ENST00000625139 305 ntBASIC20.15■□□□□ 0.82
USP39Q53GS9 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USP39Q53GS9 AC092865.7-201ENST00000641832 219 ntBASIC20.15■□□□□ 0.82
USP39Q53GS9 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP39Q53GS9 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP39Q53GS9 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.15■□□□□ 0.82
USP39Q53GS9 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP39Q53GS9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USP39Q53GS9 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.15■□□□□ 0.82
USP39Q53GS9 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
USP39Q53GS9 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.82
USP39Q53GS9 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
USP39Q53GS9 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP39Q53GS9 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USP39Q53GS9 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP39Q53GS9 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.14■□□□□ 0.81
USP39Q53GS9 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.14■□□□□ 0.81
USP39Q53GS9 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP39Q53GS9 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP39Q53GS9 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP39Q53GS9 UNC93B2-201ENST00000285383 730 ntBASIC20.14■□□□□ 0.81
USP39Q53GS9 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
USP39Q53GS9 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
USP39Q53GS9 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USP39Q53GS9 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.14■□□□□ 0.81
USP39Q53GS9 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.14■□□□□ 0.81
USP39Q53GS9 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
USP39Q53GS9 AP002982.1-201ENST00000492365 877 ntBASIC20.14■□□□□ 0.81
USP39Q53GS9 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.14■□□□□ 0.81
USP39Q53GS9 KRT18P35-201ENST00000510488 1269 ntBASIC20.14■□□□□ 0.81
USP39Q53GS9 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms