Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.44■□□□□ 0.7
PKNOX1P55347 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PKNOX1P55347 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX1P55347 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX1P55347 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX1P55347 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.43■□□□□ 0.7
PKNOX1P55347 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX1P55347 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX1P55347 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.43■□□□□ 0.7
PKNOX1P55347 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.43■□□□□ 0.7
PKNOX1P55347 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.43■□□□□ 0.7
PKNOX1P55347 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX1P55347 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
PKNOX1P55347 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX1P55347 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX1P55347 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX1P55347 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.43■□□□□ 0.7
PKNOX1P55347 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.43■□□□□ 0.7
PKNOX1P55347 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.43■□□□□ 0.7
PKNOX1P55347 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
PKNOX1P55347 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
PKNOX1P55347 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
PKNOX1P55347 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
PKNOX1P55347 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.42■□□□□ 0.7
PKNOX1P55347 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
PKNOX1P55347 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
PKNOX1P55347 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.42■□□□□ 0.7
PKNOX1P55347 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
PKNOX1P55347 KRT18P5-201ENST00000436075 1291 ntBASIC19.42■□□□□ 0.7
PKNOX1P55347 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.42■□□□□ 0.7
PKNOX1P55347 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 PTBP1P-201ENST00000554374 1601 ntBASIC19.42■□□□□ 0.7
PKNOX1P55347 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
PKNOX1P55347 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PKNOX1P55347 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX1P55347 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
PKNOX1P55347 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.41■□□□□ 0.7
PKNOX1P55347 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
PKNOX1P55347 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.41■□□□□ 0.7
PKNOX1P55347 AC016769.1-201ENST00000409132 1010 ntBASIC19.41■□□□□ 0.7
PKNOX1P55347 CNN2P6-201ENST00000439038 900 ntBASIC19.41■□□□□ 0.7
PKNOX1P55347 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.41■□□□□ 0.7
PKNOX1P55347 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
PKNOX1P55347 DUX4L16-201ENST00000555130 1264 ntBASIC19.41■□□□□ 0.7
PKNOX1P55347 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX1P55347 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.41■□□□□ 0.7
PKNOX1P55347 AC068338.2-201ENST00000563278 1430 ntBASIC19.41■□□□□ 0.7
PKNOX1P55347 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX1P55347 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.41■□□□□ 0.7
PKNOX1P55347 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
PKNOX1P55347 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PKNOX1P55347 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PKNOX1P55347 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PKNOX1P55347 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PKNOX1P55347 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.4■□□□□ 0.7
PKNOX1P55347 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PKNOX1P55347 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.4■□□□□ 0.7
PKNOX1P55347 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.4■□□□□ 0.7
PKNOX1P55347 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
PKNOX1P55347 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.4■□□□□ 0.7
PKNOX1P55347 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.4■□□□□ 0.7
PKNOX1P55347 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.4■□□□□ 0.7
PKNOX1P55347 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.4■□□□□ 0.7
PKNOX1P55347 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
PKNOX1P55347 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.4■□□□□ 0.7
PKNOX1P55347 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PKNOX1P55347 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.4■□□□□ 0.7
PKNOX1P55347 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PKNOX1P55347 KRT8P17-201ENST00000453110 1448 ntBASIC19.4■□□□□ 0.7
PKNOX1P55347 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PKNOX1P55347 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PKNOX1P55347 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PKNOX1P55347 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
PKNOX1P55347 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PKNOX1P55347 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PKNOX1P55347 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.4■□□□□ 0.7
PKNOX1P55347 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.39■□□□□ 0.7
PKNOX1P55347 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
PKNOX1P55347 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.39■□□□□ 0.7
PKNOX1P55347 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
PKNOX1P55347 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PKNOX1P55347 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
PKNOX1P55347 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
PKNOX1P55347 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.39■□□□□ 0.69
PKNOX1P55347 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.39■□□□□ 0.69
PKNOX1P55347 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PKNOX1P55347 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
PKNOX1P55347 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms