Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RB1P06400 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
RB1P06400 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
RB1P06400 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RB1P06400 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RB1P06400 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RB1P06400 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RB1P06400 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
RB1P06400 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.07■□□□□ 0.96
RB1P06400 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
RB1P06400 RNF152P1-201ENST00000397754 604 ntBASIC21.07■□□□□ 0.96
RB1P06400 AC117947.1-201ENST00000427448 529 ntBASIC21.07■□□□□ 0.96
RB1P06400 AC091390.4-202ENST00000476426 537 ntBASIC21.07■□□□□ 0.96
RB1P06400 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC21.07■□□□□ 0.96
RB1P06400 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.07■□□□□ 0.96
RB1P06400 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.07■□□□□ 0.96
RB1P06400 USF2-205ENST00000594064 1179 ntTSL 2 BASIC21.07■□□□□ 0.96
RB1P06400 AC116562.4-202ENST00000641738 218 ntBASIC21.07■□□□□ 0.96
RB1P06400 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
RB1P06400 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
RB1P06400 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
RB1P06400 AL049796.1-201ENST00000565336 1766 ntBASIC21.07■□□□□ 0.96
RB1P06400 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
RB1P06400 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RB1P06400 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
RB1P06400 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.06■□□□□ 0.96
RB1P06400 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RB1P06400 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RB1P06400 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RB1P06400 INGX-201ENST00000359239 846 ntBASIC21.06■□□□□ 0.96
RB1P06400 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RB1P06400 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC21.06■□□□□ 0.96
RB1P06400 ISCU-203ENST00000431221 799 ntTSL 2 BASIC21.06■□□□□ 0.96
RB1P06400 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.06■□□□□ 0.96
RB1P06400 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.06■□□□□ 0.96
RB1P06400 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC21.06■□□□□ 0.96
RB1P06400 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
RB1P06400 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
RB1P06400 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
RB1P06400 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC21.06■□□□□ 0.96
RB1P06400 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC21.06■□□□□ 0.96
RB1P06400 AL138966.2-201ENST00000621997 464 ntBASIC21.06■□□□□ 0.96
RB1P06400 MYC-208ENST00000641036 567 ntBASIC21.06■□□□□ 0.96
RB1P06400 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RB1P06400 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RB1P06400 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
RB1P06400 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.05■□□□□ 0.96
RB1P06400 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RB1P06400 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
RB1P06400 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.05■□□□□ 0.96
RB1P06400 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RB1P06400 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
RB1P06400 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
RB1P06400 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RB1P06400 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
RB1P06400 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
RB1P06400 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.05■□□□□ 0.96
RB1P06400 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC21.05■□□□□ 0.96
RB1P06400 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC21.05■□□□□ 0.96
RB1P06400 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.05■□□□□ 0.96
RB1P06400 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.05■□□□□ 0.96
RB1P06400 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
RB1P06400 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC21.05■□□□□ 0.96
RB1P06400 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RB1P06400 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
RB1P06400 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RB1P06400 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RB1P06400 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.04■□□□□ 0.96
RB1P06400 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
RB1P06400 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RB1P06400 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RB1P06400 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
RB1P06400 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RB1P06400 CCR12P-201ENST00000446203 998 ntBASIC21.04■□□□□ 0.96
RB1P06400 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
RB1P06400 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.04■□□□□ 0.96
RB1P06400 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC21.04■□□□□ 0.96
RB1P06400 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC21.04■□□□□ 0.96
RB1P06400 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RB1P06400 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
RB1P06400 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.04■□□□□ 0.96
RB1P06400 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RB1P06400 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
RB1P06400 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
RB1P06400 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.04■□□□□ 0.96
RB1P06400 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
RB1P06400 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
RB1P06400 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.04■□□□□ 0.96
RB1P06400 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.03■□□□□ 0.96
RB1P06400 Z98882.1-201ENST00000622160 2253 ntBASIC21.03■□□□□ 0.96
RB1P06400 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
RB1P06400 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.03■□□□□ 0.96
RB1P06400 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC21.03■□□□□ 0.96
RB1P06400 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC21.03■□□□□ 0.96
RB1P06400 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.03■□□□□ 0.96
RB1P06400 AL031133.1-201ENST00000406807 723 ntBASIC21.03■□□□□ 0.96
RB1P06400 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.03■□□□□ 0.96
RB1P06400 CLN6-204ENST00000564752 900 ntTSL 3 BASIC21.03■□□□□ 0.96
RB1P06400 KRT16P6-202ENST00000425692 1426 ntBASIC21.03■□□□□ 0.96
RB1P06400 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms