Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
APOEP02649 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
APOEP02649 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
APOEP02649 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
APOEP02649 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
APOEP02649 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
APOEP02649 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
APOEP02649 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.78■□□□□ 0.92
APOEP02649 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
APOEP02649 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.78■□□□□ 0.92
APOEP02649 AC008403.3-201ENST00000598924 454 ntBASIC20.78■□□□□ 0.92
APOEP02649 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
APOEP02649 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
APOEP02649 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC20.78■□□□□ 0.92
APOEP02649 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.78■□□□□ 0.92
APOEP02649 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
APOEP02649 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.78■□□□□ 0.92
APOEP02649 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.78■□□□□ 0.92
APOEP02649 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
APOEP02649 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
APOEP02649 SMG8-203ENST00000578922 2178 ntBASIC20.78■□□□□ 0.92
APOEP02649 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
APOEP02649 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
APOEP02649 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
APOEP02649 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
APOEP02649 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.77■□□□□ 0.92
APOEP02649 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
APOEP02649 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.77■□□□□ 0.92
APOEP02649 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
APOEP02649 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
APOEP02649 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
APOEP02649 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.77■□□□□ 0.92
APOEP02649 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.77■□□□□ 0.92
APOEP02649 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.77■□□□□ 0.92
APOEP02649 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.77■□□□□ 0.92
APOEP02649 AC006058.3-201ENST00000606217 1069 ntBASIC20.77■□□□□ 0.92
APOEP02649 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.77■□□□□ 0.92
APOEP02649 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.77■□□□□ 0.92
APOEP02649 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
APOEP02649 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
APOEP02649 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
APOEP02649 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
APOEP02649 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
APOEP02649 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
APOEP02649 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
APOEP02649 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.76■□□□□ 0.91
APOEP02649 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.76■□□□□ 0.91
APOEP02649 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
APOEP02649 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC20.76■□□□□ 0.91
APOEP02649 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
APOEP02649 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
APOEP02649 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
APOEP02649 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
APOEP02649 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
APOEP02649 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.76■□□□□ 0.91
APOEP02649 KRT17P3-201ENST00000420566 1262 ntBASIC20.76■□□□□ 0.91
APOEP02649 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
APOEP02649 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.76■□□□□ 0.91
APOEP02649 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC20.76■□□□□ 0.91
APOEP02649 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.76■□□□□ 0.91
APOEP02649 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
APOEP02649 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
APOEP02649 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
APOEP02649 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.76■□□□□ 0.91
APOEP02649 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
APOEP02649 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.75■□□□□ 0.91
APOEP02649 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
APOEP02649 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
APOEP02649 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
APOEP02649 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
APOEP02649 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.75■□□□□ 0.91
APOEP02649 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.75■□□□□ 0.91
APOEP02649 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
APOEP02649 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
APOEP02649 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.75■□□□□ 0.91
APOEP02649 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.75■□□□□ 0.91
APOEP02649 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
APOEP02649 KRT18P29-201ENST00000397031 1267 ntBASIC20.75■□□□□ 0.91
APOEP02649 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.75■□□□□ 0.91
APOEP02649 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
APOEP02649 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.75■□□□□ 0.91
APOEP02649 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
APOEP02649 PCDHAC2-203ENST00000615316 3011 ntBASIC20.75■□□□□ 0.91
APOEP02649 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
APOEP02649 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.75■□□□□ 0.91
APOEP02649 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
APOEP02649 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
APOEP02649 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
APOEP02649 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
APOEP02649 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.74■□□□□ 0.91
APOEP02649 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
APOEP02649 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
APOEP02649 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.74■□□□□ 0.91
APOEP02649 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
APOEP02649 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
APOEP02649 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
APOEP02649 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
APOEP02649 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.74■□□□□ 0.91
APOEP02649 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
APOEP02649 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms