Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRIM13O60858 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.52■□□□□ 0.71
TRIM13O60858 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.52■□□□□ 0.71
TRIM13O60858 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRIM13O60858 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRIM13O60858 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRIM13O60858 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
TRIM13O60858 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.51■□□□□ 0.71
TRIM13O60858 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
TRIM13O60858 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.51■□□□□ 0.71
TRIM13O60858 AL031963.3-201ENST00000606441 850 ntBASIC19.51■□□□□ 0.71
TRIM13O60858 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
TRIM13O60858 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.51■□□□□ 0.71
TRIM13O60858 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
TRIM13O60858 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.51■□□□□ 0.71
TRIM13O60858 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.51■□□□□ 0.71
TRIM13O60858 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRIM13O60858 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM13O60858 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.5■□□□□ 0.71
TRIM13O60858 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
TRIM13O60858 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
TRIM13O60858 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM13O60858 AP001271.2-201ENST00000624018 1556 ntBASIC19.5■□□□□ 0.71
TRIM13O60858 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM13O60858 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.5■□□□□ 0.71
TRIM13O60858 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
TRIM13O60858 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM13O60858 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM13O60858 AC016405.3-201ENST00000607710 860 ntBASIC19.5■□□□□ 0.71
TRIM13O60858 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
TRIM13O60858 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM13O60858 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
TRIM13O60858 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.5■□□□□ 0.71
TRIM13O60858 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM13O60858 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM13O60858 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRIM13O60858 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.49■□□□□ 0.71
TRIM13O60858 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM13O60858 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
TRIM13O60858 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM13O60858 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
TRIM13O60858 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.49■□□□□ 0.71
TRIM13O60858 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.49■□□□□ 0.71
TRIM13O60858 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.49■□□□□ 0.71
TRIM13O60858 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
TRIM13O60858 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
TRIM13O60858 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
TRIM13O60858 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM13O60858 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.49■□□□□ 0.71
TRIM13O60858 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM13O60858 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM13O60858 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM13O60858 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM13O60858 KRT8P20-201ENST00000423953 1409 ntBASIC19.49■□□□□ 0.71
TRIM13O60858 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM13O60858 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM13O60858 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM13O60858 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
TRIM13O60858 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRIM13O60858 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM13O60858 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM13O60858 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM13O60858 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM13O60858 AC007322.4-201ENST00000509611 723 ntBASIC19.48■□□□□ 0.71
TRIM13O60858 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.48■□□□□ 0.71
TRIM13O60858 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
TRIM13O60858 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
TRIM13O60858 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM13O60858 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM13O60858 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.48■□□□□ 0.71
TRIM13O60858 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM13O60858 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
TRIM13O60858 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
TRIM13O60858 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM13O60858 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
TRIM13O60858 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.48■□□□□ 0.71
TRIM13O60858 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRIM13O60858 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.48■□□□□ 0.71
TRIM13O60858 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRIM13O60858 AL032819.2-201ENST00000624543 2162 ntBASIC19.47■□□□□ 0.71
TRIM13O60858 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms