Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
PROM1O43490 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
PROM1O43490 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.84■□□□□ 0.61
PROM1O43490 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.84■□□□□ 0.61
PROM1O43490 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.83■□□□□ 0.61
PROM1O43490 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PROM1O43490 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.83■□□□□ 0.61
PROM1O43490 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
PROM1O43490 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PROM1O43490 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
PROM1O43490 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
PROM1O43490 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.61
PROM1O43490 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
PROM1O43490 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
PROM1O43490 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
PROM1O43490 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PROM1O43490 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
PROM1O43490 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PROM1O43490 AL390719.1-204ENST00000412397 1219 ntBASIC18.83■□□□□ 0.6
PROM1O43490 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PROM1O43490 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.83■□□□□ 0.6
PROM1O43490 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.83■□□□□ 0.6
PROM1O43490 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.83■□□□□ 0.6
PROM1O43490 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
PROM1O43490 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PROM1O43490 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.83■□□□□ 0.6
PROM1O43490 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PROM1O43490 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PROM1O43490 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PROM1O43490 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PROM1O43490 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
PROM1O43490 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
PROM1O43490 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
PROM1O43490 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PROM1O43490 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
PROM1O43490 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
PROM1O43490 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.82■□□□□ 0.6
PROM1O43490 AC092368.3-202ENST00000574180 1591 ntBASIC18.82■□□□□ 0.6
PROM1O43490 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PROM1O43490 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.82■□□□□ 0.6
PROM1O43490 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PROM1O43490 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.82■□□□□ 0.6
PROM1O43490 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.82■□□□□ 0.6
PROM1O43490 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.82■□□□□ 0.6
PROM1O43490 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.82■□□□□ 0.6
PROM1O43490 AC060766.5-201ENST00000590539 871 ntBASIC18.82■□□□□ 0.6
PROM1O43490 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.82■□□□□ 0.6
PROM1O43490 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
PROM1O43490 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
PROM1O43490 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.82■□□□□ 0.6
PROM1O43490 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.82■□□□□ 0.6
PROM1O43490 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.81■□□□□ 0.6
PROM1O43490 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.81■□□□□ 0.6
PROM1O43490 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.81■□□□□ 0.6
PROM1O43490 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.81■□□□□ 0.6
PROM1O43490 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
PROM1O43490 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.81■□□□□ 0.6
PROM1O43490 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.81■□□□□ 0.6
PROM1O43490 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 CD99P1-205ENST00000527459 561 ntBASIC18.81■□□□□ 0.6
PROM1O43490 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.81■□□□□ 0.6
PROM1O43490 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.81■□□□□ 0.6
PROM1O43490 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
PROM1O43490 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.81■□□□□ 0.6
PROM1O43490 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
PROM1O43490 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
PROM1O43490 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PROM1O43490 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PROM1O43490 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PROM1O43490 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
PROM1O43490 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PROM1O43490 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.8■□□□□ 0.6
PROM1O43490 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PROM1O43490 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PROM1O43490 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PROM1O43490 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
PROM1O43490 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.8■□□□□ 0.6
PROM1O43490 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.8■□□□□ 0.6
PROM1O43490 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PROM1O43490 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.8■□□□□ 0.6
PROM1O43490 PNMA6B-201ENST00000538162 1200 ntBASIC18.8■□□□□ 0.6
PROM1O43490 AC066615.1-201ENST00000640911 628 ntBASIC18.8■□□□□ 0.6
PROM1O43490 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.8■□□□□ 0.6
PROM1O43490 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.8■□□□□ 0.6
PROM1O43490 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PROM1O43490 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms