Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.87■□□□□ 0.77
TRIM49D1C9J1S8 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.86■□□□□ 0.77
TRIM49D1C9J1S8 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 KRT16P6-202ENST00000425692 1426 ntBASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TRIM49D1C9J1S8 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 AL031963.3-201ENST00000606441 850 ntBASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
TRIM49D1C9J1S8 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
TRIM49D1C9J1S8 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM49D1C9J1S8 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
TRIM49D1C9J1S8 AL032819.2-201ENST00000624543 2162 ntBASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms