Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NUCB2-208ENST00000529010 2274 ntAPPRIS P2 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 PRSS51-203ENST00000636217 2255 ntAPPRIS P1 TSL 5 BASIC7.7□□□□□ -1.18
MSX1P28360 FO393411.1-201ENST00000325612 420 ntBASIC7.7□□□□□ -1.18
MSX1P28360 CPSF4L-201ENST00000344935 647 ntAPPRIS P2 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 TAC1-203ENST00000350485 975 ntTSL 5 BASIC7.7□□□□□ -1.18
MSX1P28360 RN7SKP37-201ENST00000364494 296 ntBASIC7.7□□□□□ -1.18
MSX1P28360 FIG4-202ENST00000368941 791 ntTSL 3 BASIC7.7□□□□□ -1.18
MSX1P28360 MIR614-201ENST00000385082 90 ntBASIC7.7□□□□□ -1.18
MSX1P28360 IGLV11-55-201ENST00000390286 381 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
MSX1P28360 U3.18-201ENST00000390880 216 ntBASIC7.7□□□□□ -1.18
MSX1P28360 Y_RNA.582-201ENST00000391023 95 ntBASIC7.7□□□□□ -1.18
MSX1P28360 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC7.7□□□□□ -1.18
MSX1P28360 ANXA2P3-201ENST00000404883 1008 ntBASIC7.7□□□□□ -1.18
MSX1P28360 U3.34-201ENST00000408198 212 ntBASIC7.7□□□□□ -1.18
MSX1P28360 AF228730.4-201ENST00000421457 183 ntBASIC7.7□□□□□ -1.18
MSX1P28360 HNRNPA1P29-201ENST00000426409 879 ntBASIC7.7□□□□□ -1.18
MSX1P28360 NDUFB3-202ENST00000433898 503 ntAPPRIS P1 TSL 2 BASIC7.7□□□□□ -1.18
MSX1P28360 ARPC3P1-201ENST00000437218 533 ntBASIC7.7□□□□□ -1.18
MSX1P28360 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 AC005099.1-201ENST00000442083 610 ntBASIC7.7□□□□□ -1.18
MSX1P28360 COX6CP12-201ENST00000446748 202 ntBASIC7.7□□□□□ -1.18
MSX1P28360 VN1R10P-201ENST00000447106 875 ntBASIC7.7□□□□□ -1.18
MSX1P28360 HSD17B3-AS1-201ENST00000448857 1072 ntTSL 2 BASIC7.7□□□□□ -1.18
MSX1P28360 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC7.7□□□□□ -1.18
MSX1P28360 CDC42P1-201ENST00000456658 548 ntBASIC7.7□□□□□ -1.18
MSX1P28360 RNU7-140P-201ENST00000459546 60 ntBASIC7.7□□□□□ -1.18
MSX1P28360 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC7.7□□□□□ -1.18
MSX1P28360 CLDND1-205ENST00000502288 560 ntTSL 4 BASIC7.7□□□□□ -1.18
MSX1P28360 AC008629.3-201ENST00000505786 586 ntBASIC7.7□□□□□ -1.18
MSX1P28360 SNRPCP8-201ENST00000514820 211 ntBASIC7.7□□□□□ -1.18
MSX1P28360 RN7SKP141-201ENST00000516167 338 ntBASIC7.7□□□□□ -1.18
MSX1P28360 RNU6-1153P-201ENST00000516760 105 ntBASIC7.7□□□□□ -1.18
MSX1P28360 AC023632.1-201ENST00000518463 375 ntBASIC7.7□□□□□ -1.18
MSX1P28360 NDFIP1P1-201ENST00000543144 525 ntBASIC7.7□□□□□ -1.18
MSX1P28360 SLC25A3P2-201ENST00000547720 880 ntBASIC7.7□□□□□ -1.18
MSX1P28360 CYP1A1-205ENST00000564596 988 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 AC091489.2-201ENST00000566263 604 ntBASIC7.7□□□□□ -1.18
MSX1P28360 AC002519.2-203ENST00000567043 837 ntBASIC7.7□□□□□ -1.18
MSX1P28360 BPTFP1-201ENST00000579209 492 ntBASIC7.7□□□□□ -1.18
MSX1P28360 AC068790.7-201ENST00000602347 528 ntBASIC7.7□□□□□ -1.18
MSX1P28360 AC103881.1-201ENST00000603476 538 ntBASIC7.7□□□□□ -1.18
MSX1P28360 AC104117.5-201ENST00000606195 547 ntBASIC7.7□□□□□ -1.18
MSX1P28360 AL139220.2-217ENST00000609027 940 ntTSL 5 BASIC7.7□□□□□ -1.18
MSX1P28360 RBM22P6-201ENST00000611682 867 ntBASIC7.7□□□□□ -1.18
MSX1P28360 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC7.7□□□□□ -1.18
MSX1P28360 AC068205.4-201ENST00000637880 804 ntBASIC7.7□□□□□ -1.18
MSX1P28360 AC099063.3-201ENST00000642066 185 ntBASIC7.7□□□□□ -1.18
MSX1P28360 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC7.7□□□□□ -1.18
MSX1P28360 ERMARD-205ENST00000418781 1841 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 NUMA1-232ENST00000613205 3940 ntAPPRIS ALT2 TSL 5 BASIC7.7□□□□□ -1.18
MSX1P28360 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC7.7□□□□□ -1.18
MSX1P28360 AL513523.1-201ENST00000417868 1309 ntBASIC7.7□□□□□ -1.18
MSX1P28360 CELF1-202ENST00000358597 2108 ntAPPRIS ALT1 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 CTNND1-215ENST00000526938 3489 ntTSL 5 BASIC7.7□□□□□ -1.18
MSX1P28360 CLK1-201ENST00000321356 1888 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 CXCR4-202ENST00000409817 1895 ntAPPRIS P3 BASIC7.7□□□□□ -1.18
MSX1P28360 CLOCK-202ENST00000381322 4059 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 AURKA-206ENST00000395913 2169 ntAPPRIS P1 TSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 CPA4-202ENST00000445470 2718 ntTSL 2 BASIC7.7□□□□□ -1.18
MSX1P28360 SAMM50P1-201ENST00000455403 1399 ntBASIC7.7□□□□□ -1.18
MSX1P28360 AC017007.4-201ENST00000503353 1352 ntBASIC7.7□□□□□ -1.18
MSX1P28360 SEPT4-216ENST00000580844 1396 ntAPPRIS ALT2 TSL 5 BASIC7.7□□□□□ -1.18
MSX1P28360 FPR3-202ENST00000595991 2222 ntAPPRIS P1 TSL 4 BASIC7.7□□□□□ -1.18
MSX1P28360 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC7.7□□□□□ -1.18
MSX1P28360 TP63-204ENST00000392460 1668 ntTSL 1 (best) BASIC7.7□□□□□ -1.18
MSX1P28360 AL157895.1-201ENST00000451713 1404 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 ASPH-230ENST00000541428 2550 ntAPPRIS ALT2 TSL 2 BASIC7.69□□□□□ -1.18
MSX1P28360 HINFP-201ENST00000350777 3163 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 HGD-201ENST00000283871 2005 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 AL513318.2-201ENST00000602579 2012 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 WARS-204ENST00000392882 2938 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 APEX2-201ENST00000374987 3245 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 AP001528.3-201ENST00000624364 3249 ntBASIC7.69□□□□□ -1.18
MSX1P28360 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 KRT23-202ENST00000436344 1485 ntTSL 2 BASIC7.69□□□□□ -1.18
MSX1P28360 CLDN8-201ENST00000399899 2068 ntAPPRIS P1 BASIC7.69□□□□□ -1.18
MSX1P28360 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 HELB-201ENST00000247815 12866 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC7.69□□□□□ -1.18
MSX1P28360 IMPG1-204ENST00000611179 3324 ntAPPRIS ALT2 TSL 5 BASIC7.69□□□□□ -1.18
MSX1P28360 DAZ4-203ENST00000382432 2405 ntTSL 5 BASIC7.69□□□□□ -1.18
MSX1P28360 DAZ2-205ENST00000382433 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC7.69□□□□□ -1.18
MSX1P28360 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 FAM205BP-202ENST00000399773 4009 ntBASIC7.69□□□□□ -1.18
MSX1P28360 WDR31-203ENST00000374195 3101 ntAPPRIS P3 TSL 5 BASIC7.69□□□□□ -1.18
MSX1P28360 ESRG-201ENST00000583516 3140 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 RRN3-201ENST00000198767 3762 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 MAP1LC3C-201ENST00000357246 1182 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 RN7SKP226-201ENST00000364912 300 ntBASIC7.69□□□□□ -1.18
MSX1P28360 S100A8-202ENST00000368733 523 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.18
MSX1P28360 RNU5A-6P-201ENST00000384136 116 ntBASIC7.69□□□□□ -1.18
MSX1P28360 Y_RNA.509-201ENST00000384506 99 ntBASIC7.69□□□□□ -1.18
MSX1P28360 RNU6-876P-201ENST00000391295 104 ntBASIC7.69□□□□□ -1.18
MSX1P28360 CCDC134-202ENST00000402061 525 ntTSL 2 BASIC7.69□□□□□ -1.18
MSX1P28360 SNORA73.3-201ENST00000410213 189 ntBASIC7.69□□□□□ -1.18
MSX1P28360 RPL21P107-201ENST00000411449 460 ntBASIC7.69□□□□□ -1.18
MSX1P28360 AL157698.1-201ENST00000415190 1011 ntBASIC7.69□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms