Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4BQ9Y4P1 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
ATG4BQ9Y4P1 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4BQ9Y4P1 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4BQ9Y4P1 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4BQ9Y4P1 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4BQ9Y4P1 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4BQ9Y4P1 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
ATG4BQ9Y4P1 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.83■□□□□ 0.61
ATG4BQ9Y4P1 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
ATG4BQ9Y4P1 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.83■□□□□ 0.61
ATG4BQ9Y4P1 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ATG4BQ9Y4P1 AL390719.1-204ENST00000412397 1219 ntBASIC18.83■□□□□ 0.6
ATG4BQ9Y4P1 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.83■□□□□ 0.6
ATG4BQ9Y4P1 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ATG4BQ9Y4P1 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ATG4BQ9Y4P1 AC060766.5-201ENST00000590539 871 ntBASIC18.83■□□□□ 0.6
ATG4BQ9Y4P1 AC006557.6-201ENST00000623071 864 ntBASIC18.83■□□□□ 0.6
ATG4BQ9Y4P1 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.83■□□□□ 0.6
ATG4BQ9Y4P1 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
ATG4BQ9Y4P1 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
ATG4BQ9Y4P1 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ATG4BQ9Y4P1 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
ATG4BQ9Y4P1 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 CD99P1-205ENST00000527459 561 ntBASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 PNMA6B-201ENST00000538162 1200 ntBASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.82■□□□□ 0.6
ATG4BQ9Y4P1 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.81■□□□□ 0.6
ATG4BQ9Y4P1 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ATG4BQ9Y4P1 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATG4BQ9Y4P1 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.79■□□□□ 0.6
ATG4BQ9Y4P1 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms