Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 AL358472.4-201ENST00000633140 710 ntBASIC37.96■■■■□ 3.67
SHROOM4Q9ULL8 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC37.95■■■■□ 3.67
SHROOM4Q9ULL8 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC37.95■■■■□ 3.67
SHROOM4Q9ULL8 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC37.95■■■■□ 3.67
SHROOM4Q9ULL8 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC37.95■■■■□ 3.67
SHROOM4Q9ULL8 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC37.95■■■■□ 3.67
SHROOM4Q9ULL8 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC37.95■■■■□ 3.67
SHROOM4Q9ULL8 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC37.95■■■■□ 3.67
SHROOM4Q9ULL8 AP005242.2-201ENST00000580065 1175 ntBASIC37.95■■■■□ 3.67
SHROOM4Q9ULL8 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC37.95■■■■□ 3.67
SHROOM4Q9ULL8 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC37.94■■■■□ 3.66
SHROOM4Q9ULL8 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC37.94■■■■□ 3.66
SHROOM4Q9ULL8 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC37.94■■■■□ 3.66
SHROOM4Q9ULL8 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC37.94■■■■□ 3.66
SHROOM4Q9ULL8 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC37.94■■■■□ 3.66
SHROOM4Q9ULL8 AC026271.3-201ENST00000571884 352 ntBASIC37.94■■■■□ 3.66
SHROOM4Q9ULL8 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC37.94■■■■□ 3.66
SHROOM4Q9ULL8 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC37.94■■■■□ 3.66
SHROOM4Q9ULL8 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC37.94■■■■□ 3.66
SHROOM4Q9ULL8 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC37.94■■■■□ 3.66
SHROOM4Q9ULL8 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC37.94■■■■□ 3.66
SHROOM4Q9ULL8 AP002982.1-201ENST00000492365 877 ntBASIC37.93■■■■□ 3.66
SHROOM4Q9ULL8 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC37.93■■■■□ 3.66
SHROOM4Q9ULL8 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC37.93■■■■□ 3.66
SHROOM4Q9ULL8 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC37.93■■■■□ 3.66
SHROOM4Q9ULL8 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC37.93■■■■□ 3.66
SHROOM4Q9ULL8 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC37.93■■■■□ 3.66
SHROOM4Q9ULL8 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC37.93■■■■□ 3.66
SHROOM4Q9ULL8 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC37.93■■■■□ 3.66
SHROOM4Q9ULL8 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC37.92■■■■□ 3.66
SHROOM4Q9ULL8 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC37.92■■■■□ 3.66
SHROOM4Q9ULL8 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC37.92■■■■□ 3.66
SHROOM4Q9ULL8 FAM8A6P-201ENST00000407496 1135 ntBASIC37.92■■■■□ 3.66
SHROOM4Q9ULL8 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC37.92■■■■□ 3.66
SHROOM4Q9ULL8 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC37.92■■■■□ 3.66
SHROOM4Q9ULL8 KSR1P1-201ENST00000446298 240 ntBASIC37.92■■■■□ 3.66
SHROOM4Q9ULL8 CLN6-221ENST00000637494 765 ntTSL 5 BASIC37.92■■■■□ 3.66
SHROOM4Q9ULL8 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC37.92■■■■□ 3.66
SHROOM4Q9ULL8 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC37.92■■■■□ 3.66
SHROOM4Q9ULL8 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC37.91■■■■□ 3.66
SHROOM4Q9ULL8 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC37.91■■■■□ 3.66
SHROOM4Q9ULL8 AC009947.2-201ENST00000444014 672 ntBASIC37.91■■■■□ 3.66
SHROOM4Q9ULL8 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC37.91■■■■□ 3.66
SHROOM4Q9ULL8 KRT16P1-201ENST00000399124 1418 ntBASIC37.91■■■■□ 3.66
SHROOM4Q9ULL8 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC37.9■■■■□ 3.66
SHROOM4Q9ULL8 DUSP5P1-201ENST00000441325 1139 ntBASIC37.9■■■■□ 3.66
SHROOM4Q9ULL8 AC023632.3-201ENST00000521633 145 ntBASIC37.9■■■■□ 3.66
SHROOM4Q9ULL8 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC37.9■■■■□ 3.66
SHROOM4Q9ULL8 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC37.9■■■■□ 3.66
SHROOM4Q9ULL8 LINC01238-205ENST00000567549 1107 ntBASIC37.9■■■■□ 3.66
SHROOM4Q9ULL8 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC37.9■■■■□ 3.66
SHROOM4Q9ULL8 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
SHROOM4Q9ULL8 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
SHROOM4Q9ULL8 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC37.9■■■■□ 3.66
SHROOM4Q9ULL8 DGCR10-201ENST00000609839 495 ntBASIC37.9■■■■□ 3.66
SHROOM4Q9ULL8 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC37.9■■■■□ 3.66
SHROOM4Q9ULL8 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC37.89■■■■□ 3.66
SHROOM4Q9ULL8 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC37.89■■■■□ 3.66
SHROOM4Q9ULL8 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC37.89■■■■□ 3.66
SHROOM4Q9ULL8 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC37.89■■■■□ 3.66
SHROOM4Q9ULL8 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC37.89■■■■□ 3.66
SHROOM4Q9ULL8 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC37.89■■■■□ 3.66
SHROOM4Q9ULL8 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC37.89■■■■□ 3.66
SHROOM4Q9ULL8 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC37.89■■■■□ 3.66
SHROOM4Q9ULL8 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC37.89■■■■□ 3.66
SHROOM4Q9ULL8 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC37.89■■■■□ 3.66
SHROOM4Q9ULL8 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC37.89■■■■□ 3.66
SHROOM4Q9ULL8 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC37.88■■■■□ 3.66
SHROOM4Q9ULL8 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC37.88■■■■□ 3.66
SHROOM4Q9ULL8 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC37.88■■■■□ 3.65
SHROOM4Q9ULL8 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC37.88■■■■□ 3.65
SHROOM4Q9ULL8 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC37.88■■■■□ 3.65
SHROOM4Q9ULL8 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC37.88■■■■□ 3.65
SHROOM4Q9ULL8 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC37.88■■■■□ 3.65
SHROOM4Q9ULL8 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC37.88■■■■□ 3.65
SHROOM4Q9ULL8 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC37.88■■■■□ 3.65
SHROOM4Q9ULL8 H19-201ENST00000411754 1788 ntTSL 5 BASIC37.88■■■■□ 3.65
SHROOM4Q9ULL8 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC37.87■■■■□ 3.65
SHROOM4Q9ULL8 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.65
SHROOM4Q9ULL8 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.65
SHROOM4Q9ULL8 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC37.87■■■■□ 3.65
SHROOM4Q9ULL8 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.65
SHROOM4Q9ULL8 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC37.87■■■■□ 3.65
SHROOM4Q9ULL8 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC37.87■■■■□ 3.65
SHROOM4Q9ULL8 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC37.87■■■■□ 3.65
SHROOM4Q9ULL8 F2R-202ENST00000505600 442 ntTSL 2 BASIC37.87■■■■□ 3.65
SHROOM4Q9ULL8 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC37.87■■■■□ 3.65
SHROOM4Q9ULL8 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC37.87■■■■□ 3.65
SHROOM4Q9ULL8 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC37.87■■■■□ 3.65
SHROOM4Q9ULL8 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC37.86■■■■□ 3.65
SHROOM4Q9ULL8 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
SHROOM4Q9ULL8 AC005229.4-201ENST00000610085 2198 ntBASIC37.86■■■■□ 3.65
SHROOM4Q9ULL8 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
SHROOM4Q9ULL8 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC37.86■■■■□ 3.65
SHROOM4Q9ULL8 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC37.86■■■■□ 3.65
SHROOM4Q9ULL8 AC004264.1-201ENST00000608354 794 ntBASIC37.86■■■■□ 3.65
SHROOM4Q9ULL8 ERF-202ENST00000440177 2032 ntTSL 2 BASIC37.86■■■■□ 3.65
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms