Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 MIR4497-201ENST00000583208 89 ntBASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 KRT16P6-202ENST00000425692 1426 ntBASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.72■□□□□ 0.43
CLCF1Q9UBD9 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 KRT16P5-201ENST00000455284 522 ntBASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 SNORA78-201ENST00000459373 127 ntBASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC17.71■□□□□ 0.43
CLCF1Q9UBD9 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CLCF1Q9UBD9 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC17.71■□□□□ 0.42
CLCF1Q9UBD9 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC17.71■□□□□ 0.42
CLCF1Q9UBD9 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.71■□□□□ 0.42
CLCF1Q9UBD9 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CLCF1Q9UBD9 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
CLCF1Q9UBD9 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 F2R-202ENST00000505600 442 ntTSL 2 BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 AL049637.2-201ENST00000641778 930 ntBASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC17.7■□□□□ 0.42
CLCF1Q9UBD9 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 AP001412.1-201ENST00000608405 714 ntBASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.69■□□□□ 0.42
CLCF1Q9UBD9 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 AC116351.2-201ENST00000606540 1585 ntBASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 AC113410.3-201ENST00000623366 203 ntBASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.68■□□□□ 0.42
CLCF1Q9UBD9 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms