Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.9■□□□□ 0.94
SMARCAL1Q9NZC9 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SMARCAL1Q9NZC9 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.89■□□□□ 0.94
SMARCAL1Q9NZC9 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.89■□□□□ 0.94
SMARCAL1Q9NZC9 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SMARCAL1Q9NZC9 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
SMARCAL1Q9NZC9 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 RARRES2P6-201ENST00000567333 442 ntBASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 AC120498.9-201ENST00000339021 3867 ntBASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 AL032819.2-201ENST00000624543 2162 ntBASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
SMARCAL1Q9NZC9 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 KRT18P20-201ENST00000548986 1279 ntBASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 KRT18P61-201ENST00000585825 1298 ntBASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SMARCAL1Q9NZC9 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 PTBP1P-201ENST00000554374 1601 ntBASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 AC026271.2-201ENST00000428091 497 ntBASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 AC034268.1-201ENST00000441047 882 ntBASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 AL356652.1-201ENST00000615962 565 ntBASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
SMARCAL1Q9NZC9 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms