Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 DUX4L3-201ENST00000630187 1275 ntBASIC18.14■□□□□ 0.49
DDX28Q9NUL7 DUX4L7-201ENST00000630678 1275 ntBASIC18.14■□□□□ 0.49
DDX28Q9NUL7 DUX4L5-201ENST00000630834 1275 ntBASIC18.14■□□□□ 0.49
DDX28Q9NUL7 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
DDX28Q9NUL7 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 CCDC92B-201ENST00000575506 885 ntBASIC18.13■□□□□ 0.49
DDX28Q9NUL7 AC120498.10-201ENST00000621827 505 ntBASIC18.13■□□□□ 0.49
DDX28Q9NUL7 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
DDX28Q9NUL7 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 HTR7P1-202ENST00000624664 4411 ntBASIC18.12■□□□□ 0.49
DDX28Q9NUL7 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 AC011484.1-201ENST00000377652 1995 ntBASIC18.12■□□□□ 0.49
DDX28Q9NUL7 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 AC104187.1-201ENST00000607510 612 ntBASIC18.12■□□□□ 0.49
DDX28Q9NUL7 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 AC116562.4-201ENST00000641316 2276 ntBASIC18.12■□□□□ 0.49
DDX28Q9NUL7 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
DDX28Q9NUL7 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 KRT18P14-201ENST00000534205 1250 ntBASIC18.11■□□□□ 0.49
DDX28Q9NUL7 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
DDX28Q9NUL7 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
DDX28Q9NUL7 NEFHP1-201ENST00000412845 2629 ntBASIC18.1■□□□□ 0.49
DDX28Q9NUL7 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
DDX28Q9NUL7 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
DDX28Q9NUL7 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
DDX28Q9NUL7 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
DDX28Q9NUL7 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms