Protein–RNA interactions for Protein: Q9NTX5

ECHDC1, Ethylmalonyl-CoA decarboxylase, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1Q9NTX5 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC24.28■■□□□ 1.48
ECHDC1Q9NTX5 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
ECHDC1Q9NTX5 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
ECHDC1Q9NTX5 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
ECHDC1Q9NTX5 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC24.28■■□□□ 1.48
ECHDC1Q9NTX5 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC24.27■■□□□ 1.48
ECHDC1Q9NTX5 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 LBX2-AS1-202ENST00000603175 2083 ntBASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 AC026366.1-201ENST00000488803 879 ntBASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 MMAB-206ENST00000540016 945 ntTSL 3 BASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 MIR4651-201ENST00000582622 73 ntBASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
ECHDC1Q9NTX5 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 CALM3-202ENST00000391918 702 ntTSL 2 BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 AC116351.2-201ENST00000606540 1585 ntBASIC24.25■■□□□ 1.47
ECHDC1Q9NTX5 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 AC018553.1-201ENST00000616682 1458 ntBASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
ECHDC1Q9NTX5 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 ESRRAP1-201ENST00000400596 1257 ntBASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 POM121L13P-201ENST00000422362 380 ntBASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 AC009237.14-201ENST00000609975 1594 ntBASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 TMEM179-206ENST00000616017 1645 ntBASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
ECHDC1Q9NTX5 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC24.22■■□□□ 1.47
ECHDC1Q9NTX5 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
ECHDC1Q9NTX5 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC24.22■■□□□ 1.47
ECHDC1Q9NTX5 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
ECHDC1Q9NTX5 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms