Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS35Q96QK1 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.74■□□□□ 0.75
VPS35Q96QK1 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.74■□□□□ 0.75
VPS35Q96QK1 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
VPS35Q96QK1 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
VPS35Q96QK1 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.73■□□□□ 0.75
VPS35Q96QK1 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS35Q96QK1 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VPS35Q96QK1 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS35Q96QK1 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS35Q96QK1 RPS2P52-201ENST00000469610 820 ntBASIC19.73■□□□□ 0.75
VPS35Q96QK1 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 AC006058.3-201ENST00000606217 1069 ntBASIC19.73■□□□□ 0.75
VPS35Q96QK1 ITM2C-210ENST00000620962 501 ntBASIC19.73■□□□□ 0.75
VPS35Q96QK1 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.73■□□□□ 0.75
VPS35Q96QK1 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VPS35Q96QK1 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS35Q96QK1 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
VPS35Q96QK1 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS35Q96QK1 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS35Q96QK1 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
VPS35Q96QK1 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS35Q96QK1 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS35Q96QK1 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
VPS35Q96QK1 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS35Q96QK1 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS35Q96QK1 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
VPS35Q96QK1 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS35Q96QK1 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS35Q96QK1 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
VPS35Q96QK1 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS35Q96QK1 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS35Q96QK1 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS35Q96QK1 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS35Q96QK1 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS35Q96QK1 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VPS35Q96QK1 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS35Q96QK1 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS35Q96QK1 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS35Q96QK1 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS35Q96QK1 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS35Q96QK1 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS35Q96QK1 AC069544.1-201ENST00000609399 999 ntBASIC19.71■□□□□ 0.75
VPS35Q96QK1 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS35Q96QK1 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS35Q96QK1 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS35Q96QK1 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS35Q96QK1 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS35Q96QK1 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS35Q96QK1 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS35Q96QK1 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS35Q96QK1 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.7■□□□□ 0.74
VPS35Q96QK1 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS35Q96QK1 AC128676.1-201ENST00000454392 318 ntBASIC19.7■□□□□ 0.74
VPS35Q96QK1 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS35Q96QK1 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VPS35Q96QK1 AL121829.2-201ENST00000620908 328 ntBASIC19.7■□□□□ 0.74
VPS35Q96QK1 AL121906.2-201ENST00000621597 723 ntBASIC19.7■□□□□ 0.74
VPS35Q96QK1 AC073648.6-201ENST00000641589 218 ntBASIC19.7■□□□□ 0.74
VPS35Q96QK1 AC073130.3-201ENST00000624389 2278 ntBASIC19.7■□□□□ 0.74
VPS35Q96QK1 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS35Q96QK1 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms