Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AC100791.3-201ENST00000617619 330 ntBASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 AP000974.1-201ENST00000623909 2387 ntBASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
ATG4AQ8WYN0 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 AC009237.14-201ENST00000609975 1594 ntBASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 AL020996.1-203ENST00000536896 2307 ntBASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 AC026271.2-201ENST00000428091 497 ntBASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 AC006015.1-201ENST00000429970 570 ntBASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 AL031963.3-201ENST00000606441 850 ntBASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
ATG4AQ8WYN0 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 KRT18P68-201ENST00000392293 1000 ntBASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
ATG4AQ8WYN0 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ATG4AQ8WYN0 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
ATG4AQ8WYN0 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ATG4AQ8WYN0 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ATG4AQ8WYN0 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
ATG4AQ8WYN0 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
ATG4AQ8WYN0 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.58■□□□□ 0.88
ATG4AQ8WYN0 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4AQ8WYN0 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4AQ8WYN0 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4AQ8WYN0 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4AQ8WYN0 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
ATG4AQ8WYN0 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4AQ8WYN0 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.57■□□□□ 0.88
ATG4AQ8WYN0 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.57■□□□□ 0.88
ATG4AQ8WYN0 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
ATG4AQ8WYN0 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.57■□□□□ 0.88
ATG4AQ8WYN0 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ATG4AQ8WYN0 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
ATG4AQ8WYN0 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.57■□□□□ 0.88
ATG4AQ8WYN0 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 CYP2T3P-201ENST00000601990 817 ntBASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
ATG4AQ8WYN0 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 KRT8P20-201ENST00000423953 1409 ntBASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 KRT16P6-202ENST00000425692 1426 ntBASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ATG4AQ8WYN0 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms