Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 ESRRAP1-201ENST00000400596 1257 ntBASIC20.43■□□□□ 0.86
RTL3Q8N8U3 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RTL3Q8N8U3 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 AC124283.5-201ENST00000624661 1809 ntBASIC20.42■□□□□ 0.86
RTL3Q8N8U3 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 POM121L13P-201ENST00000422362 380 ntBASIC20.42■□□□□ 0.86
RTL3Q8N8U3 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RTL3Q8N8U3 PHGDH-210ENST00000641115 1638 ntBASIC20.42■□□□□ 0.86
RTL3Q8N8U3 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 MAX-217ENST00000557277 728 ntTSL 3 BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.41■□□□□ 0.86
RTL3Q8N8U3 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.41■□□□□ 0.86
RTL3Q8N8U3 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.4■□□□□ 0.86
RTL3Q8N8U3 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 AC073130.3-201ENST00000624389 2278 ntBASIC20.4■□□□□ 0.86
RTL3Q8N8U3 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RTL3Q8N8U3 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RTL3Q8N8U3 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
RTL3Q8N8U3 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RTL3Q8N8U3 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.39■□□□□ 0.86
RTL3Q8N8U3 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RTL3Q8N8U3 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RTL3Q8N8U3 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RTL3Q8N8U3 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RTL3Q8N8U3 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.39■□□□□ 0.85
RTL3Q8N8U3 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.39■□□□□ 0.85
RTL3Q8N8U3 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.39■□□□□ 0.85
RTL3Q8N8U3 POU5F1P3-201ENST00000428824 1078 ntBASIC20.39■□□□□ 0.85
RTL3Q8N8U3 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.39■□□□□ 0.85
RTL3Q8N8U3 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.39■□□□□ 0.85
RTL3Q8N8U3 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RTL3Q8N8U3 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RTL3Q8N8U3 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RTL3Q8N8U3 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
RTL3Q8N8U3 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RTL3Q8N8U3 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTL3Q8N8U3 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTL3Q8N8U3 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RTL3Q8N8U3 AC116351.2-201ENST00000606540 1585 ntBASIC20.38■□□□□ 0.85
RTL3Q8N8U3 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.38■□□□□ 0.85
RTL3Q8N8U3 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms