Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC31.23■■■□□ 2.59
VPS8Q8N3P4 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC31.23■■■□□ 2.59
VPS8Q8N3P4 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
VPS8Q8N3P4 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
VPS8Q8N3P4 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
VPS8Q8N3P4 TK2-204ENST00000525974 1178 ntTSL 2 BASIC31.23■■■□□ 2.59
VPS8Q8N3P4 Z99916.2-201ENST00000604037 246 ntBASIC31.23■■■□□ 2.59
VPS8Q8N3P4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC31.23■■■□□ 2.59
VPS8Q8N3P4 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC31.23■■■□□ 2.59
VPS8Q8N3P4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC31.22■■■□□ 2.59
VPS8Q8N3P4 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
VPS8Q8N3P4 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
VPS8Q8N3P4 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC31.22■■■□□ 2.59
VPS8Q8N3P4 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
VPS8Q8N3P4 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
VPS8Q8N3P4 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
VPS8Q8N3P4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC31.22■■■□□ 2.59
VPS8Q8N3P4 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC31.22■■■□□ 2.59
VPS8Q8N3P4 AP006294.2-201ENST00000641667 209 ntBASIC31.22■■■□□ 2.59
VPS8Q8N3P4 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
VPS8Q8N3P4 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
VPS8Q8N3P4 AL691432.2-201ENST00000607222 2038 ntBASIC31.22■■■□□ 2.59
VPS8Q8N3P4 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
VPS8Q8N3P4 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC31.21■■■□□ 2.59
VPS8Q8N3P4 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC31.21■■■□□ 2.59
VPS8Q8N3P4 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC31.21■■■□□ 2.59
VPS8Q8N3P4 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC31.21■■■□□ 2.59
VPS8Q8N3P4 C1QL1P1-201ENST00000568105 661 ntBASIC31.21■■■□□ 2.59
VPS8Q8N3P4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC31.21■■■□□ 2.59
VPS8Q8N3P4 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
VPS8Q8N3P4 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.59
VPS8Q8N3P4 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
VPS8Q8N3P4 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
VPS8Q8N3P4 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
VPS8Q8N3P4 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
VPS8Q8N3P4 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
VPS8Q8N3P4 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC31.2■■■□□ 2.59
VPS8Q8N3P4 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
VPS8Q8N3P4 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
VPS8Q8N3P4 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC31.2■■■□□ 2.58
VPS8Q8N3P4 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC31.2■■■□□ 2.58
VPS8Q8N3P4 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC31.2■■■□□ 2.58
VPS8Q8N3P4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
VPS8Q8N3P4 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
VPS8Q8N3P4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC31.19■■■□□ 2.58
VPS8Q8N3P4 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
VPS8Q8N3P4 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
VPS8Q8N3P4 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
VPS8Q8N3P4 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC31.19■■■□□ 2.58
VPS8Q8N3P4 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
VPS8Q8N3P4 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
VPS8Q8N3P4 AP001271.2-201ENST00000624018 1556 ntBASIC31.19■■■□□ 2.58
VPS8Q8N3P4 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC31.19■■■□□ 2.58
VPS8Q8N3P4 TCF3P1-201ENST00000423021 1937 ntBASIC31.18■■■□□ 2.58
VPS8Q8N3P4 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC31.18■■■□□ 2.58
VPS8Q8N3P4 RPS2P55-201ENST00000397318 883 ntBASIC31.18■■■□□ 2.58
VPS8Q8N3P4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC31.18■■■□□ 2.58
VPS8Q8N3P4 AL596275.1-201ENST00000423464 877 ntBASIC31.18■■■□□ 2.58
VPS8Q8N3P4 RPS2P4-201ENST00000476944 856 ntBASIC31.18■■■□□ 2.58
VPS8Q8N3P4 AC107956.1-201ENST00000494359 873 ntBASIC31.18■■■□□ 2.58
VPS8Q8N3P4 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC31.18■■■□□ 2.58
VPS8Q8N3P4 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC31.18■■■□□ 2.58
VPS8Q8N3P4 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC31.18■■■□□ 2.58
VPS8Q8N3P4 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC31.18■■■□□ 2.58
VPS8Q8N3P4 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
VPS8Q8N3P4 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
VPS8Q8N3P4 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC31.17■■■□□ 2.58
VPS8Q8N3P4 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
VPS8Q8N3P4 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
VPS8Q8N3P4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
VPS8Q8N3P4 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
VPS8Q8N3P4 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
VPS8Q8N3P4 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC31.17■■■□□ 2.58
VPS8Q8N3P4 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
VPS8Q8N3P4 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC31.17■■■□□ 2.58
VPS8Q8N3P4 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
VPS8Q8N3P4 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
VPS8Q8N3P4 AP006587.1-201ENST00000534129 1502 ntBASIC31.16■■■□□ 2.58
VPS8Q8N3P4 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
VPS8Q8N3P4 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
VPS8Q8N3P4 KRT18P16-201ENST00000510337 1294 ntBASIC31.16■■■□□ 2.58
VPS8Q8N3P4 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
VPS8Q8N3P4 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC31.16■■■□□ 2.58
VPS8Q8N3P4 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC31.16■■■□□ 2.58
VPS8Q8N3P4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC31.16■■■□□ 2.58
VPS8Q8N3P4 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC31.16■■■□□ 2.58
VPS8Q8N3P4 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
VPS8Q8N3P4 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
VPS8Q8N3P4 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
VPS8Q8N3P4 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
VPS8Q8N3P4 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC31.15■■■□□ 2.58
VPS8Q8N3P4 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC31.15■■■□□ 2.58
VPS8Q8N3P4 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
VPS8Q8N3P4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC31.15■■■□□ 2.58
VPS8Q8N3P4 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC31.15■■■□□ 2.58
VPS8Q8N3P4 AC113410.3-201ENST00000623366 203 ntBASIC31.15■■■□□ 2.58
VPS8Q8N3P4 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC31.15■■■□□ 2.58
VPS8Q8N3P4 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
VPS8Q8N3P4 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC31.15■■■□□ 2.58
VPS8Q8N3P4 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC31.15■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms