Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
DEPDC4Q8N2C3 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 POU5F1P4-201ENST00000413175 1085 ntBASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 KRT18P61-201ENST00000585825 1298 ntBASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 AC008175.2-201ENST00000612840 297 ntBASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 HCG11-201ENST00000411553 5696 ntBASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.43■□□□□ 0.54
DEPDC4Q8N2C3 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
DEPDC4Q8N2C3 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 AP001160.3-201ENST00000601484 763 ntBASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.41■□□□□ 0.54
DEPDC4Q8N2C3 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms