Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TPM4P67936 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TPM4P67936 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TPM4P67936 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC22.24■■□□□ 1.15
TPM4P67936 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TPM4P67936 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TPM4P67936 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TPM4P67936 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TPM4P67936 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TPM4P67936 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TPM4P67936 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC22.24■■□□□ 1.15
TPM4P67936 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TPM4P67936 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TPM4P67936 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC22.24■■□□□ 1.15
TPM4P67936 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
TPM4P67936 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC22.23■■□□□ 1.15
TPM4P67936 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
TPM4P67936 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TPM4P67936 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC22.23■■□□□ 1.15
TPM4P67936 RBM17P2-201ENST00000616397 1405 ntBASIC22.23■■□□□ 1.15
TPM4P67936 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TPM4P67936 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TPM4P67936 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC22.23■■□□□ 1.15
TPM4P67936 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TPM4P67936 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TPM4P67936 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC22.23■■□□□ 1.15
TPM4P67936 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC22.23■■□□□ 1.15
TPM4P67936 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC22.23■■□□□ 1.15
TPM4P67936 AC097381.1-201ENST00000429019 1296 ntBASIC22.23■■□□□ 1.15
TPM4P67936 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
TPM4P67936 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC22.23■■□□□ 1.15
TPM4P67936 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC22.23■■□□□ 1.15
TPM4P67936 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC22.23■■□□□ 1.15
TPM4P67936 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
TPM4P67936 MOK-225ENST00000522867 1883 ntTSL 5 BASIC22.23■■□□□ 1.15
TPM4P67936 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TPM4P67936 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TPM4P67936 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TPM4P67936 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TPM4P67936 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC22.23■■□□□ 1.15
TPM4P67936 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TPM4P67936 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TPM4P67936 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TPM4P67936 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC22.22■■□□□ 1.15
TPM4P67936 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
TPM4P67936 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
TPM4P67936 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC22.22■■□□□ 1.15
TPM4P67936 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC22.22■■□□□ 1.15
TPM4P67936 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.22■■□□□ 1.15
TPM4P67936 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC22.22■■□□□ 1.15
TPM4P67936 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC22.22■■□□□ 1.15
TPM4P67936 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC22.22■■□□□ 1.15
TPM4P67936 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
TPM4P67936 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC22.22■■□□□ 1.15
TPM4P67936 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
TPM4P67936 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM4P67936 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
TPM4P67936 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
TPM4P67936 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TPM4P67936 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC22.21■■□□□ 1.15
TPM4P67936 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC22.21■■□□□ 1.15
TPM4P67936 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
TPM4P67936 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC22.21■■□□□ 1.15
TPM4P67936 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC22.21■■□□□ 1.15
TPM4P67936 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
TPM4P67936 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
TPM4P67936 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC22.21■■□□□ 1.15
TPM4P67936 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC22.21■■□□□ 1.15
TPM4P67936 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC22.21■■□□□ 1.15
TPM4P67936 CD44-222ENST00000526025 1052 ntTSL 2 BASIC22.21■■□□□ 1.15
TPM4P67936 RHOF-204ENST00000537265 699 ntTSL 2 BASIC22.21■■□□□ 1.15
TPM4P67936 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC22.21■■□□□ 1.15
TPM4P67936 AL031432.3-201ENST00000607698 485 ntBASIC22.21■■□□□ 1.15
TPM4P67936 AC110285.6-201ENST00000617652 491 ntBASIC22.21■■□□□ 1.15
TPM4P67936 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TPM4P67936 Z82202.1-201ENST00000623446 1880 ntBASIC22.21■■□□□ 1.15
TPM4P67936 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
TPM4P67936 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TPM4P67936 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC22.21■■□□□ 1.15
TPM4P67936 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC22.21■■□□□ 1.15
TPM4P67936 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC22.2■■□□□ 1.15
TPM4P67936 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC22.2■■□□□ 1.15
TPM4P67936 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC22.2■■□□□ 1.14
TPM4P67936 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC22.2■■□□□ 1.14
TPM4P67936 AC004408.2-201ENST00000623613 2777 ntBASIC22.2■■□□□ 1.14
TPM4P67936 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
TPM4P67936 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms