Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RPL39P62891 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPL39P62891 AC135279.3-201ENST00000610945 1311 ntBASIC14.05□□□□□ -0.16
RPL39P62891 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC14.05□□□□□ -0.16
RPL39P62891 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RPL39P62891 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
RPL39P62891 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
RPL39P62891 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPL39P62891 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RPL39P62891 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RPL39P62891 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RPL39P62891 AC090340.1-201ENST00000620778 4980 ntBASIC14.05□□□□□ -0.16
RPL39P62891 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC14.05□□□□□ -0.16
RPL39P62891 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
RPL39P62891 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
RPL39P62891 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
RPL39P62891 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC14.04□□□□□ -0.16
RPL39P62891 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
RPL39P62891 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC14.04□□□□□ -0.16
RPL39P62891 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC14.04□□□□□ -0.16
RPL39P62891 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
RPL39P62891 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC14.04□□□□□ -0.16
RPL39P62891 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
RPL39P62891 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 STK25-204ENST00000405585 1643 ntTSL 2 BASIC14.04□□□□□ -0.16
RPL39P62891 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPL39P62891 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC14.03□□□□□ -0.16
RPL39P62891 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
RPL39P62891 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC14.03□□□□□ -0.16
RPL39P62891 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
RPL39P62891 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
RPL39P62891 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
RPL39P62891 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC14.03□□□□□ -0.16
RPL39P62891 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 NAA20-201ENST00000310450 920 ntTSL 2 BASIC14.03□□□□□ -0.16
RPL39P62891 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC14.03□□□□□ -0.16
RPL39P62891 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC14.03□□□□□ -0.16
RPL39P62891 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 SERP1-208ENST00000491660 830 ntTSL 2 BASIC14.03□□□□□ -0.16
RPL39P62891 AC027682.1-201ENST00000562846 899 ntBASIC14.03□□□□□ -0.16
RPL39P62891 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 CPT2-209ENST00000636935 803 ntTSL 5 BASIC14.03□□□□□ -0.16
RPL39P62891 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC14.03□□□□□ -0.16
RPL39P62891 MPST-204ENST00000404393 1329 ntTSL 5 BASIC14.03□□□□□ -0.16
RPL39P62891 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 KRT87P-202ENST00000534226 1464 ntBASIC14.03□□□□□ -0.16
RPL39P62891 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
RPL39P62891 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
RPL39P62891 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC14.03□□□□□ -0.16
RPL39P62891 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
RPL39P62891 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC14.03□□□□□ -0.16
RPL39P62891 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
RPL39P62891 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC14.03□□□□□ -0.16
RPL39P62891 AC007613.1-201ENST00000572811 2597 ntBASIC14.03□□□□□ -0.16
RPL39P62891 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
RPL39P62891 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.16
RPL39P62891 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
RPL39P62891 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.16
RPL39P62891 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPL39P62891 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPL39P62891 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
RPL39P62891 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC14.02□□□□□ -0.16
RPL39P62891 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPL39P62891 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
RPL39P62891 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC14.02□□□□□ -0.16
RPL39P62891 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
RPL39P62891 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RPL39P62891 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC14.02□□□□□ -0.17
RPL39P62891 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC14.02□□□□□ -0.17
RPL39P62891 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RPL39P62891 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC14.02□□□□□ -0.17
RPL39P62891 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
RPL39P62891 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
RPL39P62891 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
RPL39P62891 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
RPL39P62891 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms