Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HDAC4P56524 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.79■□□□□ 0.92
HDAC4P56524 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.79■□□□□ 0.92
HDAC4P56524 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.79■□□□□ 0.92
HDAC4P56524 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HDAC4P56524 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.79■□□□□ 0.92
HDAC4P56524 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
HDAC4P56524 HLA-B-256ENST00000639848 1089 ntBASIC20.79■□□□□ 0.92
HDAC4P56524 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
HDAC4P56524 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HDAC4P56524 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.79■□□□□ 0.92
HDAC4P56524 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.79■□□□□ 0.92
HDAC4P56524 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
HDAC4P56524 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HDAC4P56524 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC20.78■□□□□ 0.92
HDAC4P56524 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC4P56524 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC4P56524 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.78■□□□□ 0.92
HDAC4P56524 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC4P56524 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.78■□□□□ 0.92
HDAC4P56524 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC4P56524 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC4P56524 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.78■□□□□ 0.92
HDAC4P56524 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC4P56524 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.78■□□□□ 0.92
HDAC4P56524 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.78■□□□□ 0.92
HDAC4P56524 AC005829.2-201ENST00000571422 1056 ntBASIC20.78■□□□□ 0.92
HDAC4P56524 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.78■□□□□ 0.92
HDAC4P56524 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC4P56524 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
HDAC4P56524 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC4P56524 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC4P56524 KRT16P6-202ENST00000425692 1426 ntBASIC20.78■□□□□ 0.92
HDAC4P56524 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.78■□□□□ 0.92
HDAC4P56524 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC4P56524 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDAC4P56524 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.77■□□□□ 0.92
HDAC4P56524 AFG3L1P-217ENST00000557444 2447 ntBASIC20.77■□□□□ 0.92
HDAC4P56524 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC4P56524 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC4P56524 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC4P56524 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC4P56524 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC4P56524 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC4P56524 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC4P56524 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC4P56524 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC4P56524 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC4P56524 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.77■□□□□ 0.92
HDAC4P56524 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC4P56524 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.77■□□□□ 0.92
HDAC4P56524 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.77■□□□□ 0.92
HDAC4P56524 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.77■□□□□ 0.92
HDAC4P56524 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.77■□□□□ 0.92
HDAC4P56524 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.77■□□□□ 0.92
HDAC4P56524 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDAC4P56524 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
HDAC4P56524 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.77■□□□□ 0.91
HDAC4P56524 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
HDAC4P56524 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
HDAC4P56524 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.76■□□□□ 0.91
HDAC4P56524 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.76■□□□□ 0.91
HDAC4P56524 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
HDAC4P56524 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
HDAC4P56524 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.76■□□□□ 0.91
HDAC4P56524 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.76■□□□□ 0.91
HDAC4P56524 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.76■□□□□ 0.91
HDAC4P56524 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.76■□□□□ 0.91
HDAC4P56524 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.76■□□□□ 0.91
HDAC4P56524 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.76■□□□□ 0.91
HDAC4P56524 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
HDAC4P56524 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HDAC4P56524 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
HDAC4P56524 AC092368.3-202ENST00000574180 1591 ntBASIC20.76■□□□□ 0.91
HDAC4P56524 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC4P56524 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.75■□□□□ 0.91
HDAC4P56524 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC4P56524 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.75■□□□□ 0.91
HDAC4P56524 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC4P56524 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.75■□□□□ 0.91
HDAC4P56524 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.75■□□□□ 0.91
HDAC4P56524 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.75■□□□□ 0.91
HDAC4P56524 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.75■□□□□ 0.91
HDAC4P56524 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC4P56524 AC060766.5-201ENST00000590539 871 ntBASIC20.75■□□□□ 0.91
HDAC4P56524 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDAC4P56524 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms