Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.68■□□□□ 0.58
SOX3P41225 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX3P41225 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.68■□□□□ 0.58
SOX3P41225 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX3P41225 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SOX3P41225 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX3P41225 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX3P41225 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.68■□□□□ 0.58
SOX3P41225 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.68■□□□□ 0.58
SOX3P41225 PNMA6B-201ENST00000538162 1200 ntBASIC18.68■□□□□ 0.58
SOX3P41225 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.68■□□□□ 0.58
SOX3P41225 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX3P41225 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX3P41225 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX3P41225 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SOX3P41225 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SOX3P41225 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX3P41225 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX3P41225 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.68■□□□□ 0.58
SOX3P41225 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SOX3P41225 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX3P41225 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX3P41225 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX3P41225 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
SOX3P41225 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX3P41225 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.67■□□□□ 0.58
SOX3P41225 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX3P41225 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX3P41225 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX3P41225 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SOX3P41225 ESRRAP1-201ENST00000400596 1257 ntBASIC18.67■□□□□ 0.58
SOX3P41225 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.67■□□□□ 0.58
SOX3P41225 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.67■□□□□ 0.58
SOX3P41225 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX3P41225 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SOX3P41225 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.67■□□□□ 0.58
SOX3P41225 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.67■□□□□ 0.58
SOX3P41225 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.67■□□□□ 0.58
SOX3P41225 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX3P41225 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX3P41225 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
SOX3P41225 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX3P41225 AC020907.5-201ENST00000624372 1936 ntBASIC18.66■□□□□ 0.58
SOX3P41225 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SOX3P41225 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.66■□□□□ 0.58
SOX3P41225 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SOX3P41225 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 TMEM191A-211ENST00000637163 1067 ntBASIC18.66■□□□□ 0.58
SOX3P41225 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SOX3P41225 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
SOX3P41225 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SOX3P41225 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.66■□□□□ 0.58
SOX3P41225 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX3P41225 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.65■□□□□ 0.58
SOX3P41225 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.65■□□□□ 0.58
SOX3P41225 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.65■□□□□ 0.58
SOX3P41225 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.65■□□□□ 0.58
SOX3P41225 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
SOX3P41225 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SOX3P41225 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.65■□□□□ 0.58
SOX3P41225 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 FP700111.2-201ENST00000619190 1892 ntBASIC18.65■□□□□ 0.58
SOX3P41225 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SOX3P41225 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SOX3P41225 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SOX3P41225 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.64■□□□□ 0.58
SOX3P41225 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
SOX3P41225 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SOX3P41225 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SOX3P41225 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.64■□□□□ 0.58
SOX3P41225 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
SOX3P41225 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.64■□□□□ 0.57
SOX3P41225 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms